VisBOL2-Improving Web-Based Visualization for Synthetic Biology Designs

Benjamin Hatch; Linhao Meng; Jeanet Mante; James A. McLaughlin; James Scott-Brown; Chris J. Myers

doi:10.1021/acssynbio.1c00147

VisBOL2-Improving Web-Based Visualization for Synthetic Biology Designs

Benjamin Hatch, Linhao Meng, Jeanet Mante, James A. McLaughlin, James Scott-Brown, Chris J. Myers

Onderzoeksoutput: Bijdrage aan tijdschrift › Tijdschriftartikel › Academic › peer review

3 Citaten (Scopus)

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VisBOL is a web-based visualization tool used to depict genetic circuit designs. This tool depicts simple DNA circuits adequately, but it has become increasingly outdated as new versions of SBOL Visual were released. This paper introduces VisBOL2, a heavily redesigned version of VisBOL that makes a number of improvements to the original VisBOL, including proper functional interaction rendering, dynamic viewing, a more maintainable code base, and modularity that facilitates compatibility with other software tools. This modularity is demonstrated by incorporating VisBOL2 into a sequence visualization plugin for SynBioHub.

Originele taal-2	Engels
Pagina's (van-tot)	2111-2115
Aantal pagina's	5
Tijdschrift	ACS Synthetic Biology
Volume	10
Nummer van het tijdschrift	8
DOI's	https://doi.org/10.1021/acssynbio.1c00147
Status	Gepubliceerd - 20 aug. 2021

Financiering

The authors of this work are supported by DARPA FA8750-17-C-0229, National Science Foundation Grant No. 1939892, and a Dean’s Graduate Fellowship at the University of Colorado Boulder. The SeqViz plugin is hosted on an Azure server provided by Microsoft Research. Any opinions, findings, conclusions, or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the funding agencies.

Financiers	Financiernummer
National Science Foundation(NSF)	1939892
Defense Advanced Research Projects Agency	FA8750-17-C-0229
University of Colorado Boulder

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AU - Myers, Chris J.

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VisBOL2-Improving Web-Based Visualization for Synthetic Biology Designs

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