Reconstructing a phylogenetic level-1 network from quartets

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6 Citaten (Scopus)


We describe a method that will reconstruct an unrooted binary phylogenetic level-1 network on n taxa from the set of all quartets containing a certain fixed taxon, in O(n^3) time. We also present a more general method which can handle more diverse quartet data, but which takes O(n^6) time. Both methods proceed by solving a certain system of linear equations over the two-element field GF(2) . For a general dense quartet set, i.e. a set containing at least one quartet on every four taxa, our O(n^6) algorithm constructs a phylogenetic level-1 network consistent with the quartet set if such a network exists and returns an O(n^2) -sized certificate of inconsistency otherwise. This answers a question raised by Gambette, Berry and Paul regarding the complexity of reconstructing a level-1 network from a dense quartet set, and more particularly regarding the complexity of constructing a cyclic ordering of taxa consistent with a dense quartet set.
Originele taal-2Engels
Pagina's (van-tot)2517-2541
Aantal pagina's25
TijdschriftBulletin of Mathematical Biology
Nummer van het tijdschrift10
StatusGepubliceerd - 2014


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