We describe a method that will reconstruct an unrooted binary phylogenetic level-1 network on n taxa from the set of all quartets containing a certain ¿xed taxon, in O(n^3) time. We also present a more general method which can handle more diverse quartet data, but which takes O(n^6) time. Both methods proceed by solving a certain system of linear equations over GF(2).
For a general dense quartet set (containing at least one quartet on every four taxa) our O(n^6 ) algorithm constructs a phylogenetic level-1 network consistent with the quartet set if such a network exists and returns an (O(n^2) sized) certi¿cate of inconsistency otherwise. This answers a question raised by Gambette, Berry and Paul regarding the complexity of reconstructing a level-1 network from a dense quartet set.
|Status||Gepubliceerd - 2013|