Projecten per jaar
Organisatieprofiel
Introductie / missie
Constructing computational models to improve the knowledge of diseases, biomedical processes and structures.
Highlighted phrase
Describing, understanding and ultimately controlling life's processes
Organisatieprofiel
The research group Computational Biology develops computational models that help to obtain qualitative and quantitative knowledge of diseases, biomedical processes and structures. The computational models are developed based on a thorough understanding of systems biology modeling methods, data analysis techniques, machine learning, and parameter estimation algorithms. Topics of research are, amongst others, complex biochemical networks, diseases like metabolic syndrome, diabetes mellitus and cancer, and applied clinical data science. Next to data obtained through collaborations and partnerships with other university groups, companies and hospitals, within the Systems Biology for Oncology theme data is also achieved by own experiments. The group also puts efforts in enhancing the shift from ‘describing’ life’s processes to ‘understanding’ them and ‘capturing’ them in validated predictive models, and even ‘managing’ or ‘controlling’ them in real life. Research themes of the group are Systems Biology and Metabolic Disease, Systems Biology for Oncology, Immuno Systems Biology, and Data Science and Bioinformatics.
Vingerafdruk
Samenwerkingen en hoofdonderzoeksgebieden uit de afgelopen vijf jaar
Profielen
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Arjen-Kars Boer
- Biomedical Engineering, Chemical Biology - Universitair Hoofddocent
- EAISI Health - Universitair Hoofddocent
- Biomedical Engineering, Computational Biology - Universitair Hoofddocent
Persoon: UHD : Universitair Hoofddocent
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Dragan Bosnacki
- Biomedical Engineering, Computational Biology - Universitair Docent
- EAISI Health - Universitair Docent
Persoon: UD : Universitair Docent
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Petrus W.T. Bult
- Biomedical Engineering, Computational Biology - Promovendus
Persoon: Prom. : Promovendus
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MetaboTwin LWV24148
van Riel, N. A. W. (Project Manager), O'Donovan, S. (Project deelnemer) & Müller, J. (Projectmedewerker)
1/04/25 → 30/09/29
Project: Third tier
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Personalised dietary advice for human and planetary health (LWV23098)
van Riel, N. A. W. (Project Manager), O'Donovan, S. (Project deelnemer) & Müller, J. (Projectmedewerker)
1/04/24 → 31/03/28
Project: Third tier
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Gut-brain health effects of PREbiotics in older adults with suspected Cognitive Decline
van Riel, N. A. W. (Project Manager) & Vacancy PHD (Projectmedewerker)
1/05/23 → 31/03/27
Project: Third tier
Onderzoeksoutput
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A comparison of semi-parametric statistical modeling approaches to dynamic classification of irregularly and sparsely sampled curves
Deneer, R. (Corresponding author), Zhan, Z., Van den Heuvel, E., van Boxtel, A. G. M., Boer, A.-K., van Riel, N. A. W. & Scharnhorst, V., nov. 2025, In: Statistical Methods in Medical Research. 34, 11, blz. 2202-2218 17 blz.Onderzoeksoutput: Bijdrage aan tijdschrift › Tijdschriftartikel › Academic › peer review
Open AccessBestand4 Downloads (Pure) -
Active learning-guided mechanistic modeling of CXCL9 regulation in pancreatic cancer
Wang, B., Yelleswarapu, V. S. M. K., Descamps, L. & Eduati, F., 25 okt. 2025, bioRxiv, 32 blz.Onderzoeksoutput: Werkdocument › Preprint › Professioneel
Open AccessBestand -
An algorithmic perspective on deciphering cell-cell interactions with spatial omics data
van Santvoort, M. & Eduati, F. (Corresponding author), mei 2025, In: Briefings in Bioinformatics. 26, 3, 13 blz., bbaf236.Onderzoeksoutput: Bijdrage aan tijdschrift › Tijdschriftartikel › Academic › peer review
Open AccessBestand13 Downloads (Pure)
Datasets
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SugarVita: a Digital Board Game
van Riel, N. A. W. (Ontwerper), Eindhoven University of Technology, 30 apr. 2024
https://clinicaltrials.gov/study/NCT06392178?term=NCT06392178
Dataset
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DiaGame: Serious and personalized game for selfmanagement of diabetes
van Riel, N. A. W. (Ontwerper), Eindhoven University of Technology, 13 nov. 2023
https://www.onderzoekmetmensen.nl/en/trial/25562
Dataset
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Mixed Meal Model SBML
Baccinelli, W. (Ontwerper), O'Donovan, S. (Ontwerper), de Rooij, M. (Ontwerper) & van Riel, N. (Ontwerper), Zenodo, 17 mei 2024
Dataset: Software
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Digital twinning in pharmacy and pharmacology, fact or fiction?
van Riel, N. A. W. (Spreker)
27 nov. 2025Activiteit: Types gesprekken of presentaties › Keynote spreker › Wetenschappelijk
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Mathematical modeling of the enterohepatic circulation
van Riel, N. A. W. (Spreker)
19 nov. 2025Activiteit: Types gesprekken of presentaties › Genodigd spreker › Wetenschappelijk
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The Mixed Meal Model; quantifying metabolic resilience in overweight and obesity
O'Donovan, S. (Spreker)
8 okt. 2022 → 12 okt. 2022Activiteit: Types gesprekken of presentaties › Aangemelde presentatie › Wetenschappelijk
Knipsels
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Studies Conducted at Amsterdam University Medical Center on Obesity and Diabetes Recently Reported (Bariatric Surgery Improves Postprandial Vldl Kinetics and Restores Insulin-mediated Regulation of Hepatic Vldl)
21/09/23
1 item van Media-aandacht
Pers / media: Vakinhoudelijk commentaar
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Eindhoven University of Technology Researcher Details Research in Prostate Cancer (Exploring the Onset and Progression of Prostate Cancer through a Multicellular Agent-based Model)
18/08/23
1 item van Media-aandacht
Pers / media: Vakinhoudelijk commentaar
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Data on Proinsulin Reported by Bart van Sloun and Colleagues (Quantifying postprandial glucose responses using a hybrid modeling approach: Combining mechanistic and data-driven models in The Maastricht Study)
van Riel, N. A. W. & O'Donovan, S.
10/08/23
1 item van Media-aandacht
Pers / media: Vakinhoudelijk commentaar
Scripties/Masterproeven
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Altered Global Organization of Structural Covariance Networks Relate to Childhood Absence Epilepsy
Eussen, M. J. A. (Auteur), Breeuwer, M. (Afstudeerdocent 1), Drenthen, G. S. (Externe coach), Bosnacki, D. (Afstudeerdocent 2) & Scannell, C. (Afstudeerdocent 2), 27 feb. 2023Scriptie/Masterproef: Master
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A machine learning approach to integrative multi-omics in chronic heart failure
Maasland, T. D. (Auteur), van Riel, N. A. W. (Afstudeerdocent 1), Hilbers, P. A. J. (Afstudeerdocent 2), Bosnacki, D. (Afstudeerdocent 2) & Levin, E. (Externe coach), 25 aug. 2022Scriptie/Masterproef: Master
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A multimodal deep learning framework for predicting cancer drug response using transcriptomics and chemical descriptors
Deben, L. M. (Auteur), Eduati, F. (Afstudeerdocent 1), sep. 2025Scriptie/Masterproef: Master
Bestand