Projecten per jaar
Organisatieprofiel
Introductie / missie
Constructing computational models to improve the knowledge of diseases, biomedical processes and structures.
Highlighted phrase
Describing, understanding and ultimately controlling life's processes
Over de organisatie
The research group Computational Biology develops computational models that help to obtain qualitative and quantitative knowledge of diseases, biomedical processes and structures. The computational models are developed based on a thorough understanding of molecular modeling methods, data analysis techniques, machine learning, systems biology, and parameter estimation techniques. Next to data obtained through collaborations and partnerships with other university groups, companies and hospitals, within the Synthetic Biology arena data is also achieved by own experiments. Topics of research are, amongst others, biomembranes, protein interactions, complex biochemical networks, and diseases like metabolic syndrome, diabetes mellitus and cancer. The group also puts efforts in enhancing the shift from ‘describing’ life’s processes to ‘understanding’ them and ‘capturing’ them in validated predictive models, and even ‘managing’ or ‘controlling’ them in real life. Research themes of the group are Molecular Simulations, Systems Biology and Metabolic Disease, Systems Biology for Oncology, Synthetic Biology, Data Science and Bioinformatics.
Vingerafdruk
Samenwerkingen en hoofdonderzoeksgebieden uit de afgelopen vijf jaar
Profielen
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Mart W. Bartelds, MSc
- Biomedical Engineering, Biomodelling - Onderzoeker
- Biomedical Engineering, Synthetic Biology - Onderzoeker
Persoon: OWP : Docent / Onderzoeker
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Bas Bögels
- Biomedical Engineering, Biomodelling - Promovendus
- Biomedical Engineering, Chemical Biology - Promovendus
- Biomedical Engineering, Synthetic Biology - Promovendus
Persoon: Prom. : Promovendus
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Dragan Bosnacki
- Biomedical Engineering, Computational Biology - Universitair Docent
- Biomedical Engineering, Biomodelling - Universitair Docent
- EAISI Health - Universitair Docent
Persoon: UD : Universitair Docent
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DiaGame: Serious and personalized game for self-management of diabetes
van Riel, N. A. W., de Vries, R., Ferreira de Carvalho, D., Hilbers, P. A. J., Van Gorp, P., Kaymak, U., Haak, H. R., Wouters-van Poppel, P. & Reinders, E.
1/01/19 → 31/12/25
Project: Onderzoek direct
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NWO/Complexity/MATRyOSka
van Riel, N. A. W., O'Donovan, S., Arts, I. C. W. & Afman, L.
1/10/17 → 30/06/23
Project: Onderzoek direct
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Onderzoeksoutput
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Analysis of high-dimensional metabolomics data with complex temporal dynamics using RM-ASCA+
Erdős, B., Westerhuis, J. A., Adriaens, M. E., O’Donovan, S. D., Xie, R., Singh-Povel, C. M., Smilde, A. K. & Arts, I. C. W., 23 jun. 2023, In: PLoS Computational Biology. 19, 6, 18 blz., e1011221.Onderzoeksoutput: Bijdrage aan tijdschrift › Tijdschriftartikel › Academic › peer review
Open AccessBestand3 Downloads (Pure) -
A Synthetic Protocell‐Based Heparin Scavenger
Liu, Q., Yang, S., Seitz, I., Makri Pistikou, A-M., de Greef, T. F. A. & Kostiainen, M., 29 mrt. 2023, In: Small : Nano Micro. 19, 13, 6 blz., e2201790.Onderzoeksoutput: Bijdrage aan tijdschrift › Tijdschriftartikel › Academic › peer review
Open AccessBestand1 Citaat (Scopus)21 Downloads (Pure) -
A Theoretical Framework for Implementable Nucleic Acids Feedback Systems
Paulino, N. M. G., Foo, M., de Greef, T. F. A., Kim, J. & Bates, D. G., 12 apr. 2023, In: Bioengineering. 10, 4, 31 blz., 466.Onderzoeksoutput: Bijdrage aan tijdschrift › Tijdschriftartikel › Academic › peer review
Open AccessBestand7 Downloads (Pure)
Datasets
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Model-based analysis of postprandial glycemic response dynamics for different types of food
Rozendaal, Y. J. W. (Ontwerper), Hilbers, P. A. J. (Ontwerper) & van Riel, N. A. W. (Ontwerper), Zenodo, 2018
DOI: 10.1016/j.yclnex.2018.01.003, https://zenodo.org/record/4032428
Dataset
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Characterization of disease-specific cellular abundance profiles of chronic inflammatory skin conditions from deconvolution of biopsy samples
Félix Garza, Z. C. (Bijdrager), Lenz, M. (Ontwerper), Liebmann, J. (Bijdrager), Ertaylan, G. (Bijdrager), Born, M. (Ontwerper), Arts, I. C. W. (Ontwerper), Hilbers, P. A. J. (Ontwerper) & van Riel, N. A. W. (Bijdrager), Figshare, 2019
DOI: 10.6084/m9.figshare.c.4621205, https://springernature.figshare.com/collections/Characterization_of_disease-specific_cellular_abundance_profiles_of_chronic_inflammatory_skin_conditions_from_deconvolution_of_biopsy_samples/4621205 en nog één link, https://springernature.figshare.com/collections/Characterization_of_disease-specific_cellular_abundance_profiles_of_chronic_inflammatory_skin_conditions_from_deconvolution_of_biopsy_samples/4621205/1 (minder tonen)
Dataset
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CCDC 1517934: Experimental Crystal Structure Determination
Wang, Y. (Ontwerper), Fang, H. (Ontwerper), Tranca, I. C. (Ontwerper), Qu, H. (Ontwerper), Wang, X. (Ontwerper), Markvoort, A. J. (Ontwerper), Tian, Z. (Ontwerper) & Cao, X. (Ontwerper), Cambridge Crystallographic Data Centre, 18 nov. 2016
DOI: 10.5517/ccdc.csd.cc1myjmq, http://www.ccdc.cam.ac.uk/services/structure_request?id=doi:10.5517/ccdc.csd.cc1myjmq&sid=DataCite
Dataset
Prijzen
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AMC Principal Investigator
van Riel, Natal A.W. (Ontvanger), 1 mei 2016
Prijs: Anders › Werk, activiteit of publicatie gerelateerde prijzen (lifetime, best paper, poster etc.) › Wetenschappelijk
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Best poster award
Rozendaal, Yvonne (Ontvanger), 28 okt. 2016
Prijs: Anders › Werk, activiteit of publicatie gerelateerde prijzen (lifetime, best paper, poster etc.) › Wetenschappelijk
Activiteiten
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Digital metabolic twins; quantifying metabolic resilience in overweight/obesity
Shauna O'Donovan (Spreker)
25 mei 2022Activiteit: Types gesprekken of presentaties › Aangemelde presentatie › Wetenschappelijk
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Quantifying metabolic resilience; getting the most out of your challenge test data.
Shauna O'Donovan (Spreker)
5 mei 2022Activiteit: Types gesprekken of presentaties › Aangemelde presentatie › Wetenschappelijk
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Digital Twins; quantifying metabolic resilience from meal response data
Shauna O'Donovan (Spreker)
15 jun. 2021Activiteit: Types gesprekken of presentaties › Genodigd spreker › Wetenschappelijk
Knipsels
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Eindhoven University of Technology Researcher Details Research in Prostate Cancer (Exploring the Onset and Progression of Prostate Cancer through a Multicellular Agent-based Model)
Wilbert T. Zwart & Federica Eduati
18/08/23
1 item van Media-aandacht
Pers / media: Vakinhoudelijk commentaar
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Data on Proinsulin Reported by Bart van Sloun and Colleagues (Quantifying postprandial glucose responses using a hybrid modeling approach: Combining mechanistic and data-driven models in The Maastricht Study)
10/08/23
1 item van Media-aandacht
Pers / media: Vakinhoudelijk commentaar
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Data opslaan in DNA: waarvoor is het handig en wat zijn de uitdagingen?
16/05/23
1 Mediabijdrage
Pers / media: PR activiteiten
Impacts
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Bioinformatics and Mathematical Modelling
Rina van Dijck-Postma (Content manager), Sylvia van Beek-Verschure (Content manager), Lieke van Gorp (Content manager) & Amy Broeders (Content manager)
Impact: Research Topic/Theme (at group level)
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Brain Image Analysis
Josien P.W. Pluim (Content manager), Sylvia van Beek-Verschure (Content manager), Lieke van Gorp (Content manager), Amy Broeders (Content manager) & Erica Jansen (Content manager)
Impact: Research Topic/Theme (at group level)
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Cardiovascular Image Analysis
Josien P.W. Pluim (Content manager), Sylvia van Beek-Verschure (Content manager), Lieke van Gorp (Content manager), Amy Broeders (Content manager) & Erica Jansen (Content manager)
Impact: Research Topic/Theme (at group level)
Scripties/Masterproeven
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A Coarse-Grained Molecular Modelling Method for Studying Viruses
Auteur: de Waard, T., 31 okt. 2022Begeleider: Hilbers, P. A. J. (Afstudeerdocent 1) & Markvoort, A. J. (Afstudeerdocent 2)
Scriptie/Masterproef: Master
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A computational biology framework: a data analysis tool to support biomedical engineers in their research
Auteur: Beishuizen, T. P. A., 29 nov. 2018Begeleider: Bosnacki, D. (Afstudeerdocent 1), Cheplygina, V. (Afstudeerdocent 2), Hilbers, P. A. J. (Afstudeerdocent 2), Fletcher, G. (Afstudeerdocent 2) & Vanschoren, J. (Afstudeerdocent 2)
Scriptie/Masterproef: Master
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Altered Global Organization of Structural Covariance Networks Relate to Childhood Absence Epilepsy
Auteur: Eussen, M. J. A., 2022Begeleider: Breeuwer, M. (Afstudeerdocent 1), Drenthen, G. S. (Externe coach), Bosnacki, D. (Afstudeerdocent 2) & Scannell, C. (Afstudeerdocent 2)
Scriptie/Masterproef: Master