Omschrijving
The data provided in this repository is generated for the publication ‘Formation of motile cell clusters in heterogeneous model tumors: The role of cell-cell alignment’ by Quirine J.S. Braat, Cornelis Storm and Liesbeth M.C. Janssen and published in Physical Review E.
The data is generated using the Cellular Potts Model in CompuCell3D [1] that can be retrieved from GitHub. The simulations contain a more detailed description of the data, and the data provided here can be reproduced using the appropriate simulation code and parameters. These can be found on GitHub via https://github.com/QBraat/Cluster-Formation-Alignment.
The data in this repository has been divided into the following sets:
1. EmptyLayer_Random.zip. this data set belongs to section III.A and section III.C and contains detailed information about the cells’ positions, orientation as a function of time for the active cells in free space.
2. EmptyLater_Random_single.zip. this data set belongs to section III.A and contains processed data about the order parameter and cluster size as a function of time for the active cells in free space.
3. ConfluentLayer_Random_single.zip. this data set belongs to section III.B and contains the processed data about the order parameter and cluster size as a function of time for the active cells in a confluent layer.
4. ConfluentLayer_Random_FiniteSize.zip. this data set belongs to the data in the supplementary information.
5. ConfluentLayer_Random_InitialBlock.zip. this data set belongs to the data in the supplementary information.
Other than these sets, there is an additional data set ‘ConfluentLayer_Random.zip’, which contains the detailed information about the cells’ positions, orientation etc. as a function of time for the confluent layer simulations in section III.B and section III.C. This data set has not been included as it contains a significantly large amount of data, but can be received upon request from the authors.
The data is generated using the Cellular Potts Model in CompuCell3D [1] that can be retrieved from GitHub. The simulations contain a more detailed description of the data, and the data provided here can be reproduced using the appropriate simulation code and parameters. These can be found on GitHub via https://github.com/QBraat/Cluster-Formation-Alignment.
The data in this repository has been divided into the following sets:
1. EmptyLayer_Random.zip. this data set belongs to section III.A and section III.C and contains detailed information about the cells’ positions, orientation as a function of time for the active cells in free space.
2. EmptyLater_Random_single.zip. this data set belongs to section III.A and contains processed data about the order parameter and cluster size as a function of time for the active cells in free space.
3. ConfluentLayer_Random_single.zip. this data set belongs to section III.B and contains the processed data about the order parameter and cluster size as a function of time for the active cells in a confluent layer.
4. ConfluentLayer_Random_FiniteSize.zip. this data set belongs to the data in the supplementary information.
5. ConfluentLayer_Random_InitialBlock.zip. this data set belongs to the data in the supplementary information.
Other than these sets, there is an additional data set ‘ConfluentLayer_Random.zip’, which contains the detailed information about the cells’ positions, orientation etc. as a function of time for the confluent layer simulations in section III.B and section III.C. This data set has not been included as it contains a significantly large amount of data, but can be received upon request from the authors.
| Datum van beschikbaarheid | 18 nov. 2024 |
|---|---|
| Uitgever | Zenodo |