Transferring from ex-vivo to in-vivo: instrument localization in 3D cardiac ultrasound using Pyramid-UNet with hybrid loss

Hongxu Yang, Caifeng Shan, Tao Tan, Alexander F. Kolen, Peter de With

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

12 Citations (Scopus)

Abstract

Automated instrument localization during cardiac interventions is essential to accurately and efficiently interpret a 3D ultrasound (US) image. In this paper, we propose a method to automatically localize the cardiac intervention instrument (RF-ablation catheter or guidewire) in a 3D US volume. We propose a Pyramid-UNet, which exploits the multi-scale information for better segmentation performance. Furthermore, a hybrid loss function is introduced, which consists of contextual loss and class-balanced focal loss, to enhance the performance of the network in cardiac US images. We have collected a challenging ex-vivo dataset to validate our method, which achieves a Dice score of 69.6% being 18.8% higher than the state-of-the-art methods. Moreover, with the pre-trained model on the ex-vivo dataset, our method can be easily adapted to the in-vivo dataset with several iterations and then achieves a Dice score of 65.8% for a different instrument. With segmentation, instruments can be localized with an average error less than 3 voxels in both datasets. To the best of our knowledge, this is the first work to validate the image-based method on in-vivo cardiac datasets.

Original languageEnglish
Title of host publicationMedical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings
EditorsDinggang Shen, Pew-Thian Yap, Tianming Liu, Terry M. Peters, Ali Khan, Lawrence H. Staib, Caroline Essert, Sean Zhou
Place of PublicationBerlin
PublisherSpringer
Pages263-271
Number of pages9
ISBN (Print)9783030322533
DOIs
Publication statusPublished - 2019
Event22nd International Conference on Medical Image Computing and Computer Assisted Intervention, (MICCAI2019) - Shenzhen, China
Duration: 13 Oct 201917 Oct 2019
https://www.miccai2019.org/

Publication series

NameLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume11768 LNCS
ISSN (Print)0302-9743
ISSN (Electronic)1611-3349

Conference

Conference22nd International Conference on Medical Image Computing and Computer Assisted Intervention, (MICCAI2019)
Abbreviated titleMICCAI 2019
Country/TerritoryChina
CityShenzhen
Period13/10/1917/10/19
Internet address

Keywords

  • 3D US
  • Hybrid loss
  • Instrument localization
  • Pyramid-UNet

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