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Theoretical models for tension-dependent DNA looping time

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Abstract

The influence of tension on DNA looping has been studied both experimentally and theoretically in the past. However, different theoretical models have yielded different predictions, leaving uncertainty about their validity. These currently available models rely on approximations, which we here show to be valid only for short molecules. We briefly review the predictions of those models and propose a model that demonstrates exceptional agreement with simulations for long semiflexible chains. Additionally, we elucidate the relationship between our result and that of the previously proposed two-state model, highlighting the distinct interpretative approach that underpins our framework. Our findings offer predictive insights that pave the way for future experimental validation.
Original languageEnglish
Article numberL032041
Number of pages9
JournalPhysical Review Research
Volume7
Issue number3
DOIs
Publication statusPublished - 22 Aug 2025

Funding

We thank C. Storm for helpful suggestions. This research is financially supported by the Dutch Ministry of Education, Culture and Science (Gravitation Program 024.005.020—Interactive Polymer Materials IPM).

FundersFunder number
Ministerie van Onderwijs, Cultuur en WetenschapGravity Program 024.005.020 – Interactive Polymer Materials IPM

    Keywords

    • statistical mechanics
    • DNA
    • semiflexible polymers
    • polymer physics

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