We consider a pore-scale model for reactive flow in a thin 2-D strip, where the convective transport dominates the diffusion. Reactions take place at the lateral boundaries of the strip (the walls), where the reaction product can deposit in a layer with a non-negligible thickness compared to the width of the strip. This leads to a free boundary problem, in which the moving interface between the fluid and the deposited (solid) layer is explicitly taken into account. Using asymptotic expansion methods, we derive an upscaled, one-dimensional model by averaging in the transversal direction. The result is consistent with (Taylor dispersion) models obtained previously for a constant geometry. Finally, numerical computations are presented to compare the outcome of the effective (upscaled) model with the transversally averaged, two dimensional solution.