Dimensionality reduction of diffusion MRI measures for improved tractometry of the human brain

Maxime Chamberland, Erika P. Raven, Sila Genc, Kate Duffy, Maxime Descoteaux, Greg D. Parker, Chantal M.W. Tax, Derek K. Jones

Research output: Contribution to journalArticleAcademicpeer-review

70 Citations (Scopus)

Abstract

Various diffusion MRI (dMRI) measures have been proposed for characterising tissue microstructure over the last 15 years. Despite the growing number of experiments using different dMRI measures in assessments of white matter, there has been limited work on: 1) examining their covariance along specific pathways; and on 2) combining these different measures to study tissue microstructure. Indeed, it quickly becomes intractable for existing analysis pipelines to process multiple measurements at each voxel and at each vertex forming a streamline, highlighting the need for new ways to visualise or analyse such high-dimensional data. In a sample of 36 typically developing children aged 8–18 years, we profiled various commonly used dMRI measures across 22 brain pathways. Using a data-reduction approach, we identified two biologically-interpretable components that capture 80% of the variance in these dMRI measures. The first derived component captures properties related to hindrance and restriction in tissue microstructure, while the second component reflects characteristics related to tissue complexity and orientational dispersion. We then demonstrate that the components generated by this approach preserve the biological relevance of the original measurements by showing age-related effects across developmentally sensitive pathways. In summary, our findings demonstrate that dMRI analyses can benefit from dimensionality reduction techniques, to help disentangling the neurobiological underpinnings of white matter organisation.

Original languageEnglish
Pages (from-to)89-100
Number of pages12
JournalNeuroimage
Volume200
DOIs
Publication statusPublished - 15 Oct 2019
Externally publishedYes

Bibliographical note

Funding Information:
MC is supported by the Postdoctoral Fellowships Program from the Natural Sciences and Engineering Research Council of Canada ( PDF-502385-2017 ) and a Wellcome Trust New Investigator Award (to DKJ). ER is supported by a Marshall Sherfield Postdoctoral Fellowship. CMWT is supported by a Rubicon grant from the Netherlands Organisation for Scientific Research ( 680-50-1527 ). This work was also supported by a Wellcome Trust Investigator Award ( 096646/Z/11/Z ), a Wellcome Trust Strategic Award ( 104943/Z/14/Z ), and an EPSRC equipment grant ( EP/M029778/1 ).

Funding

MC is supported by the Postdoctoral Fellowships Program from the Natural Sciences and Engineering Research Council of Canada ( PDF-502385-2017 ) and a Wellcome Trust New Investigator Award (to DKJ). ER is supported by a Marshall Sherfield Postdoctoral Fellowship. CMWT is supported by a Rubicon grant from the Netherlands Organisation for Scientific Research ( 680-50-1527 ). This work was also supported by a Wellcome Trust Investigator Award ( 096646/Z/11/Z ), a Wellcome Trust Strategic Award ( 104943/Z/14/Z ), and an EPSRC equipment grant ( EP/M029778/1 ). MC is supported by the Postdoctoral Fellowships Program from the Natural Sciences and Engineering Research Council of Canada (PDF-502385-2017) and a Wellcome Trust New Investigator Award (to DKJ). ER is supported by a Marshall Sherfield Postdoctoral Fellowship. CMWT is supported by a Rubicon grant from the Netherlands Organisation for Scientific Research (680-50-1527). This work was also supported by a Wellcome Trust Investigator Award (096646/Z/11/Z), a Wellcome Trust Strategic Award (104943/Z/14/Z), and an EPSRC equipment grant (EP/M029778/1).The authors would like to thank Umesh Rudrapatna, Peter Hobden, John Evans, Alison Cooper and Isobel Ward (CUBRIC) for their support with data acquisition. The authors are also thankful to Jean-Christophe Houde (Sherbrooke Connectivity Imaging Lab) for sharing implementation details. The authors are also grateful to the Natural Sciences and Engineering Research Council of Canada (NSERC), the Marshall Sherfield Postdoctoral Fellowship (UK), the Netherlands Organisation for Scientific Research (NWO), the Wellcome Trust (UK) and the Engineering and Physical Sciences Research Council (EPSRC, UK) for supporting this research. Finally, we thank the participants and their families for participating in the study. The authors would like to thank Umesh Rudrapatna, Peter Hobden, John Evans, Alison Cooper and Isobel Ward (CUBRIC) for their support with data acquisition. The authors are also thankful to Jean-Christophe Houde (Sherbrooke Connectivity Imaging Lab) for sharing implementation details. The authors are also grateful to the Natural Sciences and Engineering Research Council of Canada (NSERC) , the Marshall Sherfield Postdoctoral Fellowship (UK) , the Netherlands Organisation for Scientific Research (NWO) , the Wellcome Trust (UK) and the Engineering and Physical Sciences Research Council (EPSRC, UK) for supporting this research. Finally, we thank the participants and their families for participating in the study.

Keywords

  • Diffusion MRI
  • Dimensionality reduction
  • DTI
  • HARDI
  • Tractography
  • Tractometry

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