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Chemical language models for de novo drug design: Challenges and opportunities

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Abstract

Generative deep learning is accelerating de novo drug design, by allowing the generation of molecules with desired properties on demand. Chemical language models – which generate new molecules in the form of strings using deep learning – have been particularly successful in this endeavour. Thanks to advances in natural language processing methods and interdisciplinary collaborations, chemical language models are expected to become increasingly relevant in drug discovery. This minireview provides an overview of the current state-of-the-art of chemical language models for de novo design, and analyses current limitations, challenges, and advantages. Finally, a perspective on future opportunities is provided.

Original languageEnglish
Article number102527
Number of pages9
JournalCurrent Opinion in Structural Biology
Volume79
DOIs
Publication statusPublished - Apr 2023

Bibliographical note

Funding Information:
The Institute for Complex Molecular Systems (ICMS, TU/e) and the Centre for Living Technologies (Alliance TU/e, WUR, UU, UMC Utrecht) are acknowledged for support. I thank Rıza Özçelik and Michael Moret for valuable discussions on chemical language models.

Funding

The Institute for Complex Molecular Systems (ICMS, TU/e) and the Centre for Living Technologies (Alliance TU/e, WUR, UU, UMC Utrecht) are acknowledged for support. I thank Rıza Özçelik and Michael Moret for valuable discussions on chemical language models.

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