Case study : Visualization of annotated DNA sequences

T.H.J.M Peeters; M.W.E.J. Fiers; H.M.M. Wetering, van de; J.P. Nap; J.J. Wijk, van

Case study : Visualization of annotated DNA sequences

T.H.J.M Peeters, M.W.E.J. Fiers, H.M.M. Wetering, van de, J.P. Nap, J.J. Wijk, van

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

Abstract

DNA sequences and their annotations form ever expanding data sets. Proper explorations of such data sets require new tools for visualization and analysis. In this case study, we have defined the requirements for a visualization tool for annotated DNA sequences.We have implemented these requirements in a new and flexible tool for browsing and comparing annotated DNA sequences interactively and in real-time. The use of standard information visualization techniques, such as linked windows, perspective walls, and smooth interaction, enables genome researchers to obtain better insight in large DNA data sets in an effective, efficient, and attractive way.

Original language	English
Title of host publication	VisSym 2004 (Proceedings Symposium on Visualization, Konstanz, Germany, May 19-21, 2004)
Editors	O. Deussen, C.D. Hansen, D.A. Keim, D. Saupe
Place of Publication	Aire-la-Ville, Switzerland
Publisher	Eurographics Association
Pages	109-114
ISBN (Print)	3-905673-07-X
Publication status	Published - 2004

Cite this

@inproceedings{799665427ef54a3b8d1357b43463ff6b,

title = "Case study : Visualization of annotated DNA sequences",

abstract = "DNA sequences and their annotations form ever expanding data sets. Proper explorations of such data sets require new tools for visualization and analysis. In this case study, we have defined the requirements for a visualization tool for annotated DNA sequences.We have implemented these requirements in a new and flexible tool for browsing and comparing annotated DNA sequences interactively and in real-time. The use of standard information visualization techniques, such as linked windows, perspective walls, and smooth interaction, enables genome researchers to obtain better insight in large DNA data sets in an effective, efficient, and attractive way.",

author = "T.H.J.M Peeters and M.W.E.J. Fiers and {Wetering, van de}, H.M.M. and J.P. Nap and {Wijk, van}, J.J.",

year = "2004",

language = "English",

isbn = "3-905673-07-X",

pages = "109--114",

editor = "O. Deussen and C.D. Hansen and D.A. Keim and D. Saupe",

booktitle = "VisSym 2004 (Proceedings Symposium on Visualization, Konstanz, Germany, May 19-21, 2004)",

publisher = "Eurographics Association",

}

Case study : Visualization of annotated DNA sequences. / Peeters, T.H.J.M; Fiers, M.W.E.J.; Wetering, van de, H.M.M. et al.
VisSym 2004 (Proceedings Symposium on Visualization, Konstanz, Germany, May 19-21, 2004). ed. / O. Deussen; C.D. Hansen; D.A. Keim; D. Saupe. Aire-la-Ville, Switzerland: Eurographics Association, 2004. p. 109-114.

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

TY - GEN

T1 - Case study : Visualization of annotated DNA sequences

AU - Peeters, T.H.J.M

AU - Fiers, M.W.E.J.

AU - Wetering, van de, H.M.M.

AU - Nap, J.P.

AU - Wijk, van, J.J.

PY - 2004

Y1 - 2004

N2 - DNA sequences and their annotations form ever expanding data sets. Proper explorations of such data sets require new tools for visualization and analysis. In this case study, we have defined the requirements for a visualization tool for annotated DNA sequences.We have implemented these requirements in a new and flexible tool for browsing and comparing annotated DNA sequences interactively and in real-time. The use of standard information visualization techniques, such as linked windows, perspective walls, and smooth interaction, enables genome researchers to obtain better insight in large DNA data sets in an effective, efficient, and attractive way.

AB - DNA sequences and their annotations form ever expanding data sets. Proper explorations of such data sets require new tools for visualization and analysis. In this case study, we have defined the requirements for a visualization tool for annotated DNA sequences.We have implemented these requirements in a new and flexible tool for browsing and comparing annotated DNA sequences interactively and in real-time. The use of standard information visualization techniques, such as linked windows, perspective walls, and smooth interaction, enables genome researchers to obtain better insight in large DNA data sets in an effective, efficient, and attractive way.

M3 - Conference contribution

SN - 3-905673-07-X

SP - 109

EP - 114

BT - VisSym 2004 (Proceedings Symposium on Visualization, Konstanz, Germany, May 19-21, 2004)

A2 - Deussen, O.

A2 - Hansen, C.D.

A2 - Keim, D.A.

A2 - Saupe, D.

PB - Eurographics Association

CY - Aire-la-Ville, Switzerland

ER -

Case study : Visualization of annotated DNA sequences

Abstract

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