BISEN: Biochemical simulation environment

J. Vanlier; F. Wu; F. Qi; K.C. Vinnakota; Y. Han; R.K. Dash; F. Yang; D.A. Beard

doi:10.1093/bioinformatics/btp069

BISEN: Biochemical simulation environment

J. Vanlier
, F. Wu
, F. Qi
, K.C. Vinnakota
, Y. Han
, R.K. Dash
, F. Yang
, D.A. Beard

Research output: Contribution to journal › Article › Academic › peer-review

13 Citations (Scopus)

5 Downloads (Pure)

Abstract

The Biochemical Simulation Environment (BISEN) is a suite of tools for generating equations and associated computer programs for simulating biochemical systems in the MATLAB® computing environment. This is the first package that can generate appropriate systems of differential equations for user-specified multi-compartment systems of enzymes and transporters accounting for detailed biochemical thermodynamics, rapid equilibria of multiple biochemical species and dynamic proton and metal ion buffering. © The Author 2009. Published by Oxford University Press. All rights reserved.

Original language	English
Pages (from-to)	836-837
Journal	Bioinformatics
Volume	25
Issue number	6
DOIs	https://doi.org/10.1093/bioinformatics/btp069
Publication status	Published - 2009

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title = "BISEN: Biochemical simulation environment",

abstract = "The Biochemical Simulation Environment (BISEN) is a suite of tools for generating equations and associated computer programs for simulating biochemical systems in the MATLAB{\textregistered} computing environment. This is the first package that can generate appropriate systems of differential equations for user-specified multi-compartment systems of enzymes and transporters accounting for detailed biochemical thermodynamics, rapid equilibria of multiple biochemical species and dynamic proton and metal ion buffering. {\textcopyright} The Author 2009. Published by Oxford University Press. All rights reserved.",

author = "J. Vanlier and F. Wu and F. Qi and K.C. Vinnakota and Y. Han and R.K. Dash and F. Yang and D.A. Beard",

year = "2009",

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AU - Vanlier, J.

AU - Wu, F.

AU - Qi, F.

AU - Vinnakota, K.C.

AU - Han, Y.

AU - Dash, R.K.

AU - Yang, F.

AU - Beard, D.A.

PY - 2009

Y1 - 2009

N2 - The Biochemical Simulation Environment (BISEN) is a suite of tools for generating equations and associated computer programs for simulating biochemical systems in the MATLAB® computing environment. This is the first package that can generate appropriate systems of differential equations for user-specified multi-compartment systems of enzymes and transporters accounting for detailed biochemical thermodynamics, rapid equilibria of multiple biochemical species and dynamic proton and metal ion buffering. © The Author 2009. Published by Oxford University Press. All rights reserved.

AB - The Biochemical Simulation Environment (BISEN) is a suite of tools for generating equations and associated computer programs for simulating biochemical systems in the MATLAB® computing environment. This is the first package that can generate appropriate systems of differential equations for user-specified multi-compartment systems of enzymes and transporters accounting for detailed biochemical thermodynamics, rapid equilibria of multiple biochemical species and dynamic proton and metal ion buffering. © The Author 2009. Published by Oxford University Press. All rights reserved.

U2 - 10.1093/bioinformatics/btp069

DO - 10.1093/bioinformatics/btp069

M3 - Article

C2 - 19244386

SN - 1367-4803

VL - 25

SP - 836

EP - 837

JO - Bioinformatics

JF - Bioinformatics

IS - 6

ER -

BISEN: Biochemical simulation environment

Abstract

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