BISEN: Biochemical simulation environment

J. Vanlier, F. Wu, F. Qi, K.C. Vinnakota, Y. Han, R.K. Dash, F. Yang, D.A. Beard

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Abstract

The Biochemical Simulation Environment (BISEN) is a suite of tools for generating equations and associated computer programs for simulating biochemical systems in the MATLAB® computing environment. This is the first package that can generate appropriate systems of differential equations for user-specified multi-compartment systems of enzymes and transporters accounting for detailed biochemical thermodynamics, rapid equilibria of multiple biochemical species and dynamic proton and metal ion buffering. © The Author 2009. Published by Oxford University Press. All rights reserved.
Original languageEnglish
Pages (from-to)836-837
JournalBioinformatics
Volume25
Issue number6
DOIs
Publication statusPublished - 2009

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    Vanlier, J., Wu, F., Qi, F., Vinnakota, K. C., Han, Y., Dash, R. K., Yang, F., & Beard, D. A. (2009). BISEN: Biochemical simulation environment. Bioinformatics, 25(6), 836-837. https://doi.org/10.1093/bioinformatics/btp069