ApiNATOMY: Towards multiscale views of human anatomy

Bernard de Bono; Pierre Grenon; Michiel Helvensteijn; Joost Kok; Natallia Kokash

doi:10.1007/978-3-319-12571-8

ApiNATOMY: Towards multiscale views of human anatomy

Bernard de Bono, Pierre Grenon, Michiel Helvensteijn, Joost Kok, Natallia Kokash

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

4 Citations (Scopus)

Abstract

Physiology experts deal with complex biophysical relationships, across multiple spatial and temporal scales. Automating the discovery of such relationships, in terms of physiological meaning, is a key goal to the physiology community. ApiNATOMY is an effort to provide an interface between the physiology expert’s knowledge and all ranges of data relevant to physiology. It does this through an intuitive graphical interface for managing semantic metadata and ontologies relevant to physiology. In this paper, we present a web-based ApiNATOMY environment, allowing physiology experts to navigate through circuitboard visualizations of body components, and their cardiovascular and neural connections, across different scales. Overlaid on these schematics are graphical renderings of organs, neurons and gene products, as well as mathematical models of processes semantically annotated with this knowledge.

Original language	English
Title of host publication	Advances in Intelligent DataAnalysis XIII - 13th International Symposium, IDA 2014, Proceedings
Editors	Hendrik Blockeel, Matthijs van Leeuwen, Veronica Vinciotti
Publisher	Springer
Pages	72-83
Number of pages	12
ISBN (Electronic)	9783319125701
DOIs	https://doi.org/10.1007/978-3-319-12571-8
Publication status	Published - 2014
Externally published	Yes
Event	PAKDD 2006 International Workshop on Knowledge Discovery in Life Science Literature, KDLL 2006 - Singapore, Singapore Duration: 9 Apr 2006 → 9 Apr 2006

Publication series

Name	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume	8819
ISSN (Print)	0302-9743
ISSN (Electronic)	1611-3349

Conference

Conference	PAKDD 2006 International Workshop on Knowledge Discovery in Life Science Literature, KDLL 2006
Country/Territory	Singapore
City	Singapore
Period	9/04/06 → 9/04/06

Bibliographical note

Publisher Copyright:
© 2014 Springer International Publishing Switzerland.

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10.1007/978-3-319-12571-8

Cite this

de Bono, B., Grenon, P., Helvensteijn, M., Kok, J., & Kokash, N. (2014). ApiNATOMY: Towards multiscale views of human anatomy. In H. Blockeel, M. van Leeuwen, & V. Vinciotti (Eds.), Advances in Intelligent DataAnalysis XIII - 13th International Symposium, IDA 2014, Proceedings (pp. 72-83). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 8819). Springer. https://doi.org/10.1007/978-3-319-12571-8

de Bono, Bernard ; Grenon, Pierre ; Helvensteijn, Michiel et al. / ApiNATOMY : Towards multiscale views of human anatomy. Advances in Intelligent DataAnalysis XIII - 13th International Symposium, IDA 2014, Proceedings. editor / Hendrik Blockeel ; Matthijs van Leeuwen ; Veronica Vinciotti. Springer, 2014. pp. 72-83 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).

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title = "ApiNATOMY: Towards multiscale views of human anatomy",

abstract = "Physiology experts deal with complex biophysical relationships, across multiple spatial and temporal scales. Automating the discovery of such relationships, in terms of physiological meaning, is a key goal to the physiology community. ApiNATOMY is an effort to provide an interface between the physiology expert{\textquoteright}s knowledge and all ranges of data relevant to physiology. It does this through an intuitive graphical interface for managing semantic metadata and ontologies relevant to physiology. In this paper, we present a web-based ApiNATOMY environment, allowing physiology experts to navigate through circuitboard visualizations of body components, and their cardiovascular and neural connections, across different scales. Overlaid on these schematics are graphical renderings of organs, neurons and gene products, as well as mathematical models of processes semantically annotated with this knowledge.",

author = "{de Bono}, Bernard and Pierre Grenon and Michiel Helvensteijn and Joost Kok and Natallia Kokash",

note = "Publisher Copyright: {\textcopyright} 2014 Springer International Publishing Switzerland.; PAKDD 2006 International Workshop on Knowledge Discovery in Life Science Literature, KDLL 2006 ; Conference date: 09-04-2006 Through 09-04-2006",

year = "2014",

doi = "10.1007/978-3-319-12571-8",

language = "English",

series = "Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)",

publisher = "Springer",

pages = "72--83",

editor = "Hendrik Blockeel and {van Leeuwen}, Matthijs and Veronica Vinciotti",

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}

de Bono, B, Grenon, P, Helvensteijn, M, Kok, J & Kokash, N 2014, ApiNATOMY: Towards multiscale views of human anatomy. in H Blockeel, M van Leeuwen & V Vinciotti (eds), Advances in Intelligent DataAnalysis XIII - 13th International Symposium, IDA 2014, Proceedings. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 8819, Springer, pp. 72-83, PAKDD 2006 International Workshop on Knowledge Discovery in Life Science Literature, KDLL 2006, Singapore, Singapore, 9/04/06. https://doi.org/10.1007/978-3-319-12571-8

ApiNATOMY: Towards multiscale views of human anatomy. / de Bono, Bernard; Grenon, Pierre; Helvensteijn, Michiel et al.
Advances in Intelligent DataAnalysis XIII - 13th International Symposium, IDA 2014, Proceedings. ed. / Hendrik Blockeel; Matthijs van Leeuwen; Veronica Vinciotti. Springer, 2014. p. 72-83 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 8819).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

TY - GEN

T1 - ApiNATOMY

T2 - PAKDD 2006 International Workshop on Knowledge Discovery in Life Science Literature, KDLL 2006

AU - de Bono, Bernard

AU - Grenon, Pierre

AU - Helvensteijn, Michiel

AU - Kok, Joost

AU - Kokash, Natallia

PY - 2014

Y1 - 2014

N2 - Physiology experts deal with complex biophysical relationships, across multiple spatial and temporal scales. Automating the discovery of such relationships, in terms of physiological meaning, is a key goal to the physiology community. ApiNATOMY is an effort to provide an interface between the physiology expert’s knowledge and all ranges of data relevant to physiology. It does this through an intuitive graphical interface for managing semantic metadata and ontologies relevant to physiology. In this paper, we present a web-based ApiNATOMY environment, allowing physiology experts to navigate through circuitboard visualizations of body components, and their cardiovascular and neural connections, across different scales. Overlaid on these schematics are graphical renderings of organs, neurons and gene products, as well as mathematical models of processes semantically annotated with this knowledge.

AB - Physiology experts deal with complex biophysical relationships, across multiple spatial and temporal scales. Automating the discovery of such relationships, in terms of physiological meaning, is a key goal to the physiology community. ApiNATOMY is an effort to provide an interface between the physiology expert’s knowledge and all ranges of data relevant to physiology. It does this through an intuitive graphical interface for managing semantic metadata and ontologies relevant to physiology. In this paper, we present a web-based ApiNATOMY environment, allowing physiology experts to navigate through circuitboard visualizations of body components, and their cardiovascular and neural connections, across different scales. Overlaid on these schematics are graphical renderings of organs, neurons and gene products, as well as mathematical models of processes semantically annotated with this knowledge.

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AN - SCOPUS:84909989590

T3 - Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

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BT - Advances in Intelligent DataAnalysis XIII - 13th International Symposium, IDA 2014, Proceedings

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de Bono B, Grenon P, Helvensteijn M, Kok J, Kokash N. ApiNATOMY: Towards multiscale views of human anatomy. In Blockeel H, van Leeuwen M, Vinciotti V, editors, Advances in Intelligent DataAnalysis XIII - 13th International Symposium, IDA 2014, Proceedings. Springer. 2014. p. 72-83. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)). doi: 10.1007/978-3-319-12571-8

ApiNATOMY: Towards multiscale views of human anatomy

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