Projects per year
Personal profile
Research profile
Shauna O’Donovan is an assistant professor in the Department of Biomedical Engineering (research group Computational Biology), working on systems biology for the immune-gut axis. She uses computational approaches to investigate how factors such as the gut microbiome and chronic inflammation contribute to the development of Type 2 Diabetes and cardiovascular disease. She is particularly interested in developing and deploying hybrid-approaches, combining the favorable features of machine learning techniques and mechanistic mathematical models to generate models that can not only integrate different data types but can also be trained with less data. In this way, she aims to construct a holistic in silico model of metabolic health, shedding light on how differences in gut health and chronic low-grade inflammation influence the development of cardiometabolic diseases and aiding in the design of personalised treatment programs for cardiometabolic diseases.
Academic background
Shauna O’Donovan received a B.SC in Mathematical Science (2013) and a M.Sc in Bioinformatics and Computational Biology (2015) from University College Cork, Ireland. She then went on to pursue a PhD in systems biology at Maastricht University under the supervision of Prof. Theo de Kok developing computational approaches to understand dynamic behaviors of biological systems from time series of omics measurements. She obtained her PhD in 2020. She then joined the Division of Human Nutrition and Health at Wageningen University as a postdoc. In 2022 she was appointed assistant professor at the Computational Biology group at the Department of Biomedical Engineering (TU/e, the Netherlands) working on systems biology for the immune-gut axis.
Education/Academic qualification
Bioinformatics/biostatistics, biomathematics, biomechanics, Doctor, Modelling the dynamics in time series of metabolic and transcriptomic data; Insulin resistance and liver toxicity. , Maastricht University
Award Date: 28 Sept 2020
Bioinformatics/biostatistics, biomathematics, biomechanics, Master, Bioinformatics and Computational Biology, University College Cork
Award Date: 26 Feb 2015
Mathematics, Bachelor, Mathematical Sciences, University College Cork
Award Date: 31 Oct 2013
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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SDG 3 Good Health and Well-being
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Collaborations and top research areas from the last five years
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Energetic Digital Heart Twin
van Riel, N. A. W. (Project Manager), O'Donovan, S. (Project member) & Vacancy PHD (Project member)
1/08/26 → 31/07/31
Project: Third tier
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MetaboTwin: Improving health benefits of sustainable protein foods via simulation and prediction of metabolic responses to complex meals (LWV24148)
van Riel, N. A. W. (Project Manager), O'Donovan, S. (Project member), Müller, J. (Project member) & Slothouber, M. (Project communication officer)
1/04/25 → 30/09/29
Project: Third tier
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Personalised dietary advice for human and planetary health (LWV23098)
van Riel, N. A. W. (Project Manager), O'Donovan, S. (Project member) & Müller, J. (Project member)
1/04/24 → 31/03/28
Project: Third tier
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PRECODE: Gut-brain health effects of prebiotics in older adults with suspected cognitive decline (LWV22109)
van Riel, N. A. W. (Project Manager), Vacancy PHD (Project member), O'Donovan, S. (Project member), Beigy, M. (Project member), Van Gorp, P. (Project member) & Genga, L. (Project member)
1/05/23 → 31/03/27
Project: Third tier
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MATRyOShka: Metabolic adaptation, transitions and resilience in overweight individuals
van Riel, N. A. W. (Project Manager), O'Donovan, S. (Project member), Arts, I. C. W. (Project member) & Afman, L. A. (Project member)
1/10/17 → 30/06/23
Project: Research direct
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Gut-brain health effects of PREbiotics in older adults with suspected COgnitive DEcline: design of the PRECODE randomised placebo-controlled trial
Kruger, K., van der Veen, H., Beigy, M. B., O'Donovan, S. D., Riel, van, N. A. W., B. Remie, L., Aarts, E., Steegenga, W., Smeets, P. A. M., van Trijp, M. P. H., de Groot, L. C. P. G. M. & Vermeiren, Y. (Corresponding author), 7 Apr 2026, In: Frontiers in Nutrition. 13, 25 p., 1738622.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile12 Downloads (Pure) -
Conditional universal differential equations capture population dynamics and interindividual variation in c-peptide production
de Rooij, M. (Corresponding author), van Riel, N. A. W. & O'Donovan, S. D., 31 Jul 2025, In: npj Systems Biology and Applications. 11, 1, 10 p., 84.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile3 Link opens in a new tab Citations (Scopus)40 Downloads (Pure) -
Diurnal differences in postprandial glucose and triglyceride metabolism reveal metabolic flexibility and resilience
Dörner, R., Hägele, F., O'Donovan, S. D., Miles-Chan, J. L., Müller, M. & Bosy-Westphal, A. (Corresponding author), 1 May 2025, In: American Journal of Physiology : Cell Physiology. 328, 5, p. C1383-C1388 6 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile4 Link opens in a new tab Citations (Scopus)33 Downloads (Pure) -
Physiology-informed regularisation enables training of universal differential equation systems for biological applications
de Rooij, M. (Corresponding author), Erdős, B., van Riel, N. A. W. & O'Donovan, S. D., Jan 2025, In: PLoS Computational Biology. 21, 1, 19 p., e1012198.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile8 Link opens in a new tab Citations (Scopus)59 Downloads (Pure) -
Simultaneous Discovery and Personalisation of Unknown C-Peptide Production using Conditional Universal Differential Equations
de Rooij, M., van Riel, N. A. W. & O'Donovan, S. D., 2025.Research output: Contribution to conference › Poster
Datasets
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Mixed Meal Model SBML
Baccinelli, W. (Creator), O'Donovan, S. (Creator), de Rooij, M. (Creator) & van Riel, N. (Creator), Zenodo, 17 May 2024
Dataset: Software
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The Mixed Meal Model; quantifying metabolic resilience in overweight and obesity
O'Donovan, S. (Speaker)
8 Oct 2022 → 12 Oct 2022Activity: Talk or presentation types › Contributed talk › Scientific
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Digital metabolic twins; quantifying metabolic resilience in overweight/obesity
O'Donovan, S. (Speaker)
25 May 2022Activity: Talk or presentation types › Contributed talk › Scientific
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Quantifying metabolic resilience; getting the most out of your challenge test data.
O'Donovan, S. (Speaker)
5 May 2022Activity: Talk or presentation types › Contributed talk › Scientific
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Quantifying metabolic resilience; getting the most out of your challenge test data
O'Donovan, S. (Speaker)
4 May 2022 → 7 May 2022Activity: Talk or presentation types › Contributed talk › Scientific
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Digital Twins; quantifying metabolic resilience from meal response data
O'Donovan, S. (Speaker)
15 Jun 2021Activity: Talk or presentation types › Invited talk › Scientific
Courses
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Capita selecta in bioinformatics
O'Donovan, S., Bosnacki, D. & van Riel, N. A. W. 1/09/26 → 31/08/27
Course
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Capita selecta in bioinformatics
Bosnacki, D., van Riel, N. A. W. & O'Donovan, S. 1/09/24 → 31/08/27
Course
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Systems biology models and metabolism
van Riel, N. A. W., O'Donovan, S. & de Rooij, M. 1/09/24 → 31/08/27
Course
Press/Media
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Data on Proinsulin Reported by Bart van Sloun and Colleagues (Quantifying postprandial glucose responses using a hybrid modeling approach: Combining mechanistic and data-driven models in The Maastricht Study)
van Riel, N. A. W. & O'Donovan, S.
10/08/23
1 item of Media coverage
Press/Media: Expert Comment