• Groene Loper 5, Department of Mathematics and Computer Science

    5612 AP Eindhoven

    Netherlands

  • P.O. Box 513, Metaforum

    5600 MB Eindhoven

    Netherlands

Research Output

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Article
2020

Coarse-grained modeling of cell division in 3D: influence of density, medium viscosity, and inter-membrane friction on cell growth and nearest neighbor distribution

Madhikar, P., Astrom, J., Westerholm, J., Baumeier, B. & Karttunen, M., 5 Jan 2020, In : Soft Materials.

Research output: Contribution to journalArticleAcademicpeer-review

Excited-state electronic structure of molecules using many-body Green's functions: Quasiparticles and electron-hole excitations with VOTCA-XTP

Tirimbò, G., Sundaram, V., Caylak, O., Scharpach, W., Sijen, J., Junghans, C., Brown, J., Zapata Ruiz, F., Renaud, N., Wehner, J. & Baumeier, B., 21 Mar 2020, In : Journal of Chemical Physics. 152, 11, 14 p., 114103.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Fluid-Structure Interaction in Transient-Based Extended Defect Detection of Pipe Walls

Zanganeh, R., Jabbari, E., Tijsseling, A. & Keramat, A., 1 Apr 2020, In : Journal of Hydraulic Engineering. 146, 4, 04020015.

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Inverse reflector design for a point source and far-field target

Romijn, L. B., ten Thije Boonkkamp, J. H. M. & IJzerman, W. L., 1 May 2020, In : Journal of Computational Physics. 408, 23 p., 109283.

Research output: Contribution to journalArticleAcademicpeer-review

Multiscale simulations of singlet and triplet exciton dynamics in energetically disordered molecular systems based on many-body Green's functions theory

Wehner, J. & Baumeier, B., Mar 2020, In : New Journal of Physics. 22, 3, 12 p., 033033.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
1 Citation (Scopus)
5 Downloads (Pure)

Quantitative predictions of photoelectron spectra in amorphous molecular solids from multiscale quasiparticle embedding

Tirimbo, G., de Vries, X., Weijtens, C. H. L., Bobbert, P. A., Coehoorn, R., Baumeier, B. & Neumann, T., 7 Jan 2020, In : Physical Review B. 101, 3, 10 p., 035402.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
1 Citation (Scopus)
7 Downloads (Pure)

Resonant microwaves probing acousticwaves from an RF plasma jet

Platier, B., Staps, T. J. A., Hak, C. C. J. M., Beckers, J. & IJzerman, W. L., 17 Apr 2020, In : Plasma Sources Science and Technology. 29, 4, 7 p., 045024.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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3 Downloads (Pure)

Transition from ambipolar to free diffusion in an EUV-induced argon plasma

Platier, B., Limpens, R., Lassise, A. C., Staps, T. J. A., van Ninhuijs, M. A. W., Daamen, K. A., Luiten, O. J., IJzerman, W. L. & Beckers, J., 9 Mar 2020, In : Applied Physics Letters. 116, 10, 4 p., 103703.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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9 Downloads (Pure)

Ultrafast formation of the charge transfer state of prodan reveals unique aspects of the chromophore environment

Baral, S., Phillips, M., Yan, H., Avenso, J., Gundlach, L., Baumeier, B. & Lyman, E., 2 Apr 2020, In : The journal of physical chemistry. B. 124, 13, p. 2643-2651 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

2019

An adaptive minimum spanning tree multielement method for uncertainty quantification of smooth and discontinuous responses

Halder, Y. V., Sanderse, B. & Koren, B., 1 Jan 2019, In : SIAM Journal on Scientific Computing. 41, 6, p. A3524-A3648 25 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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8 Downloads (Pure)

Backbone chemical composition and monomer sequence effects on phenylene polymer persistence lengths

Forero-Martinez, N. C., Baumeier, B. & Kremer, K., 23 Jul 2019, In : Macromolecules. 52, 14, p. 5307-5316 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
1 Citation (Scopus)
15 Downloads (Pure)

Computation of double freeform optical surfaces using a Monge–Ampère solver: Application to beam shaping

Yadav, N. K., ten Thije Boonkkamp, J. H. M. & IJzerman, W. L., 15 May 2019, In : Optics Communications. 439, p. 251-259 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

2 Citations (Scopus)
1 Downloads (Pure)

Decay of the electron density and the electron collision frequency between successive discharges of a pulsed plasma jet in N2

van der Schans, M., Platier, B., Koelman, P., van de Wetering, F. M. J. H., van Dijk, J., Beckers, J., Nijdam, S. & IJzerman, W., 27 Mar 2019, In : Plasma Sources Science and Technology. 28, 3, 13 p., 035020.

Research output: Contribution to journalArticleAcademicpeer-review

3 Citations (Scopus)
22 Downloads (Pure)

Evolutionary approach to constructing a deep feedforward neural network for prediction of electronic coupling elements in molecular materials

Çaylak, O., Yaman, A. & Baumeier, B., 12 Mar 2019, In : Journal of Chemical Theory and Computation. 15, 3, p. 1777-1784 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
1 Citation (Scopus)
47 Downloads (Pure)

Insights into the kinetics of supramolecular comonomer incorporation in water

Lafleur, R. P. M., Schoenmakers, S. M. C., Madhikar, P., Bochicchio, D., Baumeier, B., Palmans, A. R. A., Pavan, G. M. & Meijer, E. W., 23 Apr 2019, In : Macromolecules. 52, 8, p. 3049-3055 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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22 Downloads (Pure)

Resonant microwaves probing the spatial afterglow of an RF plasma jet

Platier, B., Staps, T. J. A., Van Der Schans, M., IJzerman, W. L. & Beckers, J., 16 Dec 2019, In : Applied Physics Letters. 115, 25, 5 p., 254103.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
1 Citation (Scopus)
18 Downloads (Pure)

Systematic design of the color point of a white LED

Meretska, M. L., Vissenberg, G., Lagendijk, A., Ijzerman, W. L. & Vos, W. L., 18 Dec 2019, In : ACS Photonics. 6, 12, p. 3070-3075 6 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
15 Downloads (Pure)
2018

A least-squares method for the inverse reflector problem in arbitrary orthogonal coordinates

Beltman, R., ten Thije Boonkkamp, J. & IJzerman, W., 15 Aug 2018, In : Journal of Computational Physics. 367, p. 347-373 27 p.

Research output: Contribution to journalArticleAcademicpeer-review

5 Citations (Scopus)
3 Downloads (Pure)
2 Downloads (Pure)

Conservative polytopal mimetic discretization of the incompressible Navier–Stokes equations

Beltman, R., Anthonissen, M. J. H. & Koren, B., 1 Oct 2018, In : Journal of Computational and Applied Mathematics. 340, 1 October 2018, p. 443-473 31 p.

Research output: Contribution to journalArticleAcademicpeer-review

3 Citations (Scopus)
3 Downloads (Pure)

Determination of microparticle characteristics in an etching plasma

Schepers, L. P. T., Beckers, J. & IJzerman, W. L., 1 Nov 2018, In : Contributions to Plasma Physics. 58, 10, p. 985-994 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

4 Citations (Scopus)

Electronic excitations in complex molecular environments: Many-body Green's functions theory in votca-XTP

Wehner, J., Brombacher, L., Brown, J., Junghans, C., Caylak, O., Khalak, Y., Madhikar, P., Tirimbò, G. & Baumeier, B., 11 Dec 2018, In : Journal of Chemical Theory and Computation. 14, 12, p. 6253-6268 16 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
8 Citations (Scopus)
40 Downloads (Pure)

Full linear multistep methods as root-finders

van Lith, B. S., ten Thije Boonkkamp, J. H. M. & IJzerman, W. L., 1 Mar 2018, In : Applied Mathematics and Computation. 320, p. 190-201 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
9 Downloads (Pure)

Improved general-purpose five-point model for water: TIP5P/2018

Khalak, Y., Baumeier, B. & Karttunen, M., 14 Dec 2018, In : Journal of Chemical Physics. 149, 22, 10 p., 224507.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)
1 Downloads (Pure)

Morphology of proliferating epithelial cellular tissue

Madhikar, P., Åström, J., Baumeier, B. & Karttunen, M., 19 Nov 2018, In : arXiv.org, e-Print Archive, Physics. 14 p., 1811.07573v1.

Research output: Contribution to journalArticleAcademic

Open Access
File
15 Downloads (Pure)

Oxygen content dependent etch rate of single polymer microparticles confined in the sheath region of a low pressure radiofrequency argon/oxygen plasma

Schepers, L. P. T., IJzerman, W. L. & Beckers, J., 19 Sep 2018, In : Journal of Physics D: Applied Physics. 51, 37, 8 p., 375203.

Research output: Contribution to journalArticleAcademicpeer-review

3 Citations (Scopus)

Unsteady pressures influenced by trapped air pockets in water-filled pipelines

Bergant, A., Tijsseling, A., Kim, Y., Karadzic, U., Zhou, L., Lambert, M. F. & Simpson, A. R., 1 Jan 2018, In : Strojniski Vestnik / Journal of Mechanical Engineering. 64, 9, p. 501-512 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)
2017

An acoustic-convective splitting-based approach for the Kapila two-phase flow model

ten Eikelder, M. F. P., Daude, F., Koren, B. & Tijsseling, A. S., 15 Feb 2017, In : Journal of Computational Physics. 331, p. 188-208 21 p.

Research output: Contribution to journalArticleAcademicpeer-review

4 Citations (Scopus)
6 Downloads (Pure)

Analytical modeling of light transport in scattering materials with strong absorption

Meretska, M. L., Uppu, R., Vissenberg, G., Lagendijk, A., Ijzerman, W. L. & Vos, W. L., 2 Oct 2017, In : Optics Express. 25, 20, p. A906-A921

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
9 Citations (Scopus)
95 Downloads (Pure)

A quantification method for numerical dissipation in quasi-DNS and under-resolved DNS, and effects of numerical dissipation in quasi-DNS and under-resolved DNS of turbulent channel flows

Komen, E. M. J., Camilo, L. H., Shams, A., Geurts, B. J. & Koren, B., 15 Sep 2017, In : Journal of Computational Physics. 345, p. 565-595 31 p.

Research output: Contribution to journalArticleAcademicpeer-review

16 Citations (Scopus)

Electric field measurements on plasma bullets in N2 using four-wave mixing

van der Schans, M., Böhm, P., Teunissen, H. J., Nijdam, S., IJzerman, W. L. & Czarnetzki, U., 20 Oct 2017, In : Plasma Sources Science and Technology. 26, 11, 15 p., 115006.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
8 Citations (Scopus)
116 Downloads (Pure)

Embedded WENO: A design strategy to improve existing WENO schemes

van Lith, B. S., ten Thije Boonkkamp, J. H. M. & IJzerman, W. L., 1 Feb 2017, In : Journal of Computational Physics. 330, p. 529-549 21 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
8 Citations (Scopus)
101 Downloads (Pure)

Infotaxis in a turbulent 3D channel flow

Eggels, A. W., Kunnen, R. P. J., Koren, B. & Tijsseling, A. S., 15 Jan 2017, In : Journal of Computational and Applied Mathematics. 310, p. 44-58 15 p.

Research output: Contribution to journalArticleAcademicpeer-review

4 Citations (Scopus)
14 Downloads (Pure)

Intermolecular singlet and triplet exciton transfer integrals from many-body Green's functions theory

Wehner, J. & Baumeier, B., 11 Apr 2017, In : Journal of Chemical Theory and Computation. 13, 4, p. 1584-1594 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
9 Citations (Scopus)
70 Downloads (Pure)

Moisture-induced buckling of paper sheets, analysis and simulation

de Böck, R., van de Ven, A. A. F., Saes, L. H., Maubach, J. M. L. & Koren, B., 1 Dec 2017, In : International Journal of Solids and Structures. 128, p. 296-308 13 p.

Research output: Contribution to journalArticleAcademicpeer-review

9 Downloads (Pure)

Non-intrusive uncertainty quantification using reduced cubature rules

van den Bos, L. M. M., Koren, B. & Dwight, R. P., 1 Mar 2017, In : Journal of Computational Physics. 332, p. 418-445 28 p.

Research output: Contribution to journalArticleAcademicpeer-review

5 Citations (Scopus)

Phase space ray tracing for a two-dimensional parabolic reflector

Filosa, C., ten Thije Boonkkamp, J. H. M. & IJzerman, W. L., 2017, In : Mathematics and Statistics. 5, 4, p. 135-142 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
91 Downloads (Pure)
2016

A mimetic spectral element solver for the Grad-Shafranov equation

Palha da Silva Clérigo, A., Koren, B. & Felici, F. A. A., 1 Jul 2016, In : Journal of Computational Physics. 316, p. 63-93 31 p.

Research output: Contribution to journalArticleAcademicpeer-review

6 Citations (Scopus)
7 Downloads (Pure)

An improved one-dimensional model for liquid slugs travelling in pipelines

Tijsseling, A. S., Hou, Q. & Bozkus, Z., 2016, In : Journal of Pressure Vessel Technology. Transactions of the ASME. 138, 1, p. 011301-1/8 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

5 Citations (Scopus)
6 Downloads (Pure)

A novel scheme for Liouville's equation with a discontinuous Hamiltonian and applications to geometrical optics

van Lith, B. S., ten Thije Boonkkamp, J. H. M., IJzerman, W. L. & Tukker, T. W., Aug 2016, In : Journal of Scientific Computing. 68, 2, p. 739-771 33 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)
8 Downloads (Pure)

Finite-volume scheme for anisotropic diffusion

Es, van, B., Koren, B. & de Blank, H., 1 Feb 2016, In : Journal of Computational Physics. 306, p. 422-442

Research output: Contribution to journalArticleAcademicpeer-review

6 Citations (Scopus)
12 Downloads (Pure)

Getting excited: challenges in quantum-classical studies of excitons in polymeric systems

Bagheri Varnousfaderani, B., Baumeier, B. & Karttunen, M. E. J., 2016, In : Physical Chemistry Chemical Physics. 18, 44, p. 30297-30304 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
4 Citations (Scopus)
142 Downloads (Pure)

How to distinguish elastically scattered light from Stokes shifted light for solid-state lighting?

Meretska, M. L., Lagendijk, A., Thyrrestryp, H., Mosk, A. P., IJzerman, W. L. & Vos, W. L., 7 Mar 2016, In : Journal of Applied Physics. 119, 9, p. 1-9 9 p., 093102.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
6 Citations (Scopus)
81 Downloads (Pure)

Implementation of the full viscoresistive magnetohydrodynamic equations in a nonlinear finite element code

Haverkort, J. W., de Blank, H. J., Huysmans, G. T. A., Pratt, J. & Koren, B., 1 Jul 2016, In : Journal of Computational Physics. 316, p. 281-302 22 p.

Research output: Contribution to journalArticleAcademicpeer-review

4 Citations (Scopus)
2 Downloads (Pure)

Ray tracing method in phase space for two-dimensional optical systems

Filosa, C., ten Thije Boonkkamp, J. H. M. & IJzerman, W. L., 1 May 2016, In : Applied Optics. 55, 13, p. 3599-3606 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

7 Citations (Scopus)
8 Downloads (Pure)

Solvent effects on optical excitations of poly para phenylene ethynylene studied by QM/MM simulations based on many-body Green's functions theory

Bagheri, B., Karttunen, M. & Baumeier, B., 1 Oct 2016, In : European Physical Journal : Special Topics. 225, 8, p. 1743–1756 14 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
5 Citations (Scopus)
75 Downloads (Pure)

Sparse block factorization of saddle point matrices

Lungten, S., Schilders, W. H. A. & Maubach, J. M. L., 2016, In : Linear Algebra and Its Applications. 502, p. 214–242 29 p.

Research output: Contribution to journalArticleAcademicpeer-review

5 Citations (Scopus)
10 Downloads (Pure)
2015

A Golub-Kahan-type reduction method for matrix pairs

Hochstenbach, M. E., Reichel, L. & Yu, X., 2015, In : Journal of Scientific Computing. 65, 2, p. 767-789

Research output: Contribution to journalArticleAcademicpeer-review

3 Citations (Scopus)

A least-squares method for optimal transport using the Monge-Ampère equation

Prins, C. R., Thije Boonkkamp, ten, J. H. M., IJzerman, W. L. & Tukker, T. W., 2015, In : SIAM Journal on Scientific Computing. 37, 6, p. B937-B961

Research output: Contribution to journalArticleAcademicpeer-review

18 Citations (Scopus)
1 Downloads (Pure)

Clustering of vertically constrained passive particles in homogeneous isotropic turbulence

De Pietro, M., Hinsberg, van, M. A. T., Biferale, L., Clercx, H. J. H., Perlekar, P. & Toschi, F., 2015, In : Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 91, 5, p. 053002-1/7 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
7 Citations (Scopus)
90 Downloads (Pure)