• Groene Loper, Building 15, Gemini-South 2.106, Secretary Rina van Dijck-Postma

    5612 AZ Eindhoven

    Netherlands

Student theses

3D medical image segmentation with labeled and unlabeled data using autoencoders

Author: Sital, C., 28 Nov 2019

Supervisor: Raaijmakers, A. (Supervisor 1), Weese, J. (External person) (External coach) & Brosch, T. (External person) (External coach)

Student thesis: Master

A computational biology framework: a data analysis tool to support biomedical engineers in their research

Author: Beishuizen, T., 29 Nov 2018

Supervisor: Bosnacki, D. (Supervisor 1), Cheplygina, V. (Supervisor 2), Hilbers, P. (Supervisor 2), Fletcher, G. (Supervisor 2) & Vanschoren, J. (Supervisor 2)

Student thesis: Master

Analyzing the relation between brain lesions and short association fibers using diffusion MRI

Author: Kamps, J., Jun 2017

Supervisor: Sepasian, N. (Supervisor 1), Fuster, A. (Supervisor 2) & Pluim, J. (Supervisor 2)

Student thesis: Master

Automated spinous process segmentation in X-ray images using convolutional neural networks

Author: Roodhorst, S., 17 Dec 2018

Supervisor: Pluim, J. (Supervisor 1) & Walsum, van, T. (External person) (External coach)

Student thesis: Master

Brain blood perfusion and white matter integrity in accelerated cognitive ageing patiens with epilepsy

Author: Stevens, J., 31 Oct 2019

Supervisor: Breeuwer, M. (Supervisor 1), Pluim, J. (Supervisor 2), Aldenkamp, A. (Supervisor 2), Zinger, S. (Supervisor 2), Mestrom, R. (Supervisor 2) & Bernas, A. (Supervisor 2)

Student thesis: Master

Canonical correlation analysis on microbial and metabolite data of individuals with metabolic syndrome

Author: van der Stam, J., 19 Jan 2019

Supervisor: Hilbers, P. (Supervisor 1), van Riel, N. (Supervisor 2), Veta, M. (Supervisor 2), Levin, E. (External person) (External coach) & Nieuwdorp, M. (External person) (External coach)

Student thesis: Master

Causal candidate genes identification for familial hypercholesterolemia family based on whole-genome sequencing

Author: Wang, Q., 31 Aug 2017

Supervisor: Hilbers, P. (Supervisor 1), van Riel, N. (Supervisor 2), Hovingh, K. (External person) (External coach), Bosnacki, D. (Supervisor 2) & Veta, M. (Supervisor 2)

Student thesis: Master

Clustered tumor phenotypes and resectability prediction for PDA using radiomic feature analysis

Author: Janse, M. H., 27 Sep 2018

Supervisor: de With, P. (Supervisor 1), Pluim, J. (Supervisor 2), Zinger, S. (Supervisor 2) & Hermans, J. (External person) (External coach)

Student thesis: Master

Content based CT retrieval for pulmonary nodules: deep metric learning based feature extraction

Author: Aerts, T., 28 Feb 2019

Supervisor: Menkovski, V. (Supervisor 1), Holenderski, M. (Supervisor 2) & Veta, M. (Supervisor 2)

Student thesis: Master

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Convolutional neural networks for detection of metastases in patients diagnosed with breast cancer

Author: Nijhof, T., 25 Jan 2018

Supervisor: Pluim, J. (Supervisor 1)

Student thesis: Master

CycleGAN for coronay vessel segmentation

Author: van den Bosch, P., 29 Aug 2019

Supervisor: Pluim, J. (Supervisor 1), Bovendeerd, P. (Supervisor 2), Veta, M. (Supervisor 2) & Oliván-Bescós, J. (External person) (External coach)

Student thesis: Master

Deep learning approaches for prostate cancer detection and grading in Bi-parametric MRI

Author: de Vente, C., 29 Aug 2019

Supervisor: Veta, M. (Supervisor 1), Vos, P. (External person) (External coach), van Riel, N. (Supervisor 2) & Pluim, J. (Supervisor 2)

Student thesis: Master

Deep learning for the detection of cerebral microinfarcts in MR images

Author: Volmer, L., 31 Oct 2019

Supervisor: Pluim, J. (Supervisor 1), Veta, M. (Supervisor 2) & van Riel, N. (Supervisor 2)

Student thesis: Master

Effect of SNR and user-defined tractography parameters on group analyses of diffusion tensor metrics

Author: Vos, I., 27 Feb 2020

Supervisor: Breeuwer, M. (Supervisor 1), Leemans, A. L. (External person) (External coach) & De Luca, A. (External person) (External coach)

Student thesis: Master

From hyperspectral data cube to tumor prediction

Author: Weijtmans, P., 20 Jun 2019

Supervisor: Pluim, J. (Supervisor 1) & Shan, C. (Supervisor 2)

Student thesis: Master

In vivo assessment of the subchondral bone plate in patients with knee osteoarthritis using second generation HR-pQCT

Author: van Mourik, M., 28 Mar 2019

Supervisor: Ito, K. (Supervisor 1), van Rietbergen, B. (Supervisor 2), Breeuwer, M. (Supervisor 2), van den Bergh, J. P. (External person) (External coach), Geusens, P. P. (External person) (External coach) & Wyers, C. E. (External person) (External coach)

Student thesis: Master

Mapping the homunculus in sensorimotor cortex using fMRI

Author: Bakker, C., 28 Sep 2017

Supervisor: Pluim, J. (Supervisor 1), Cheplygina, V. (Supervisor 2), Markvoort, A. (Supervisor 2) & Schellekens, W. (External person) (External coach)

Student thesis: Master

Meta-learning for medical image segmentation

Author: van Sonsbeek, T., 19 Dec 2019

Supervisor: Cheplygina, V. (Supervisor 1), Pluim, J. P. (Supervisor 2) & van Riel, N. A. (Supervisor 2)

Student thesis: Master

Neuromelanin imaging using magnetization transfer MRI at 7T

Author: van Boxel, S., 31 Aug 2017

Supervisor: Pluim, J. (Supervisor 1), Priovoulos, N. (External person) (External coach), Jacobs, H. (External person) (External coach) & Ivanov, D. (External person) (External coach)

Student thesis: Master

Open implementation and evaluation of transverse oscillations using high frame rate single acquisitions

Author: van Hees, R., 21 Jun 2018

Supervisor: van de Vosse, F. (Supervisor 1), Lopata, R. (Supervisor 2), Arabul, M. (Supervisor 2), Breeuwer, M. (Supervisor 2) & Belt, H. (Supervisor 2)

Student thesis: Master

Primary tumor origin classification of lung nodules in spectral CT using transfer learning

Author: Hesse, L., 20 Jun 2019

Supervisor: Pluim, J. (Supervisor 1), de Jong, P. A. (External person) (External coach), Cheplygina, V. (Supervisor 2) & Eduati, F. (Supervisor 2)

Student thesis: Master

Real-time fMRI: multi-echo acquisition as a method for physiological confound reduction

Author: Versteijlen, M., 29 Aug 2019

Supervisor: Pluim, J. (Supervisor 1), Breeuwer, M. (Supervisor 2) & van Rietbergen, B. (Supervisor 2)

Student thesis: Master

Real-time fMRI for therapeutic applications: investigation into distortion and motion correction

Author: van der Burg, C., 30 Aug 2018

Supervisor: Breeuwer, M. (Supervisor 1) & Lamerichs, R. (Supervisor 2)

Student thesis: Master

Re-referencing methods for high-density electrocorticographic signals: evaluating alternatives of common average re-referencing

Author: Pilmeyer, J., 29 Nov 2018

Supervisor: Pluim, J. (Supervisor 1), Cheplygina, V. (Supervisor 2), Eduati, F. (Supervisor 2), Freudenburg, Z. (External person) (External coach) & Branco, M. (External person) (External coach)

Student thesis: Master

Respiratory correlated four-dimensional T2-weighted Turbo Spin Echo MRI using Cartesian-Spiral K-space sampling trajectory

Author: Akdag, O., 28 Nov 2019

Supervisor: Pluim, J. P. (Supervisor 1), Raaijmakers, A. (Supervisor 2), Loerakker, S. (Supervisor 2) & Tijssen, R. (External person) (External coach)

Student thesis: Master

Retinal structure recognition in images reconstructed from A-Scans of an OCT-probe

Author: Weijers, R., 23 Feb 2017

Supervisor: Pluim, J. (Supervisor 1), ter Haar Romenij, B. (Supervisor 2), Steinbuch, M. (Supervisor 2), van de Molengraft, M. (Supervisor 2) & Douven, Y. (Supervisor 2)

Student thesis: Master

Segmentation and classification of skin cancer in histopathological whole slide images

Author: van Zon, M., 28 Nov 2019

Supervisor: Pluim, J. P. (Supervisor 1), Veta, M. (Supervisor 2), Eduati, F. (Supervisor 2), van Diest, P. J. (External person) (External coach) & Stathonikos, N. (External person) (External coach)

Student thesis: Master

Segmentation techniques for the visible mouse

Author: Panday, V., 30 Jun 2003

Supervisor: ter Haar Romenij, B. (Supervisor 1), van den Bosch, P. (Supervisor 2) & Strijkers, G. (Supervisor 2)

Student thesis: Master

Tackling B1+ inhomogeneity problems at high field MRI to be able to predict neoadjuvant chemotherapy response in breast cancer patients

Author: Elschot, E., 30 Jan 2020

Supervisor: Raaijmakers, A. (Supervisor 1), Breeuwer, M. (Supervisor 2), Eduati, F. (Supervisor 2), Wijnen, J. P. (External coach) & van den Wildenberg, L. (External coach)

Student thesis: Master

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The effect of resolution on bone mechanical properties in the human distal radius assessed by finite element analysis: a comparison between HR-pQCT and QCT resolution scans and between HR-pQCT generations

Author: Voermans, A., 29 Mar 2018

Supervisor: Ito, K. (Supervisor 1), van Rietbergen, B. (Supervisor 2), van den Bergh, J. P. (External person) (External coach), Arts, J. (. (Supervisor 2), Pluim, J. (Supervisor 2) & de Jong, J. (Supervisor 2)

Student thesis: Master

Towards respiratory motion correction in PET through non-rigid MRI registration guided by ultrasound synchronization

Author: Belsley, G., 30 Aug 2018

Supervisor: Pluim, J. (Supervisor 1) & Madore, B. (External person) (External coach)

Student thesis: Master

Vessel feature learning using a foveal fully convolutional neural network

Author: Tio, D., 19 Dec 2019

Supervisor: Breeuwer, M. (Supervisor 1), Pluim, J. P. (Supervisor 2), van de Vosse, F. N. (Supervisor 1) & Weese, J. (External person) (External coach)

Student thesis: Master

X-ray image denoising using deep-learning

Author: Giurgia, M., 29 Aug 2019

Supervisor: Pluim, J. (Supervisor 1), Markvoort, B. (Supervisor 2), Veta, M. (Supervisor 2), Oliván-Bescós, J. (External person) (External coach) & Rongen, P. (External person) (External coach)

Student thesis: Master

X-ray scatter correction using sinusoidal modulation

Author: Pieters, M., 30 Mar 2017

Supervisor: Ruijters, D. (Supervisor 1) & Pluim, J. (Supervisor 2)

Student thesis: Master