Medical Image Analysis

Search results

• 3D medical image segmentation with labeled and unlabeled data using autoencoders

  Author: Sital, C. K., 28 Nov 2019

  Supervisor: Raaijmakers, A. (Supervisor 1), Weese, J. (External person) (External coach) & Brosch, T. (External person) (External coach)

  Student thesis: Master

• A computational biology framework: a data analysis tool to support biomedical engineers in their research

  Author: Beishuizen, T. P. A., 29 Nov 2018

  Supervisor: Bosnacki, D. (Supervisor 1), Cheplygina, V. (Supervisor 2), Hilbers, P. A. J. (Supervisor 2), Fletcher, G. (Supervisor 2) & Vanschoren, J. (Supervisor 2)

  Student thesis: Master

• A Functionalized Anatomical Model for Transcutaneous Electrical Stimulation of the Spinal Cord to Improve Upper Extremity Motor Function

  Author: de Graaf, M. A. F. A., 13 Sep 2021

  Supervisor: Raaijmakers, A. J. E. (Supervisor 1), Pluim, J. P. W. (Supervisor 2), Lopata, R. G. P. (Supervisor 2) & Paoles, E. (External coach)

  Student thesis: Master

• Analyzing the relation between brain lesions and short association fibers using diffusion MRI

  Author: Kamps, J. J. W., Jun 2017

  Supervisor: Sepasian, N. (Supervisor 1), Fuster, A. (Supervisor 2) & Pluim, J. P. W. (Supervisor 2)

  Student thesis: Master

• Assessment of paired and unpaired learning to improve the image quality of onboard CBCT for radiotherapy of prostate cancer

  Author: Kerckhaert, C. E. M., 2021

  Supervisor: Pluim, J. P. W. (Supervisor 1), van Eijnatten, M. (Supervisor 2), Tijssen, H. N. (External coach) & Markvoort, A. J. (Supervisor 2)

  Student thesis: Master

• Automated Cardiac MR Scar Quantification with an Optimized Cascaded Pipeline and GAN-Based Data Augmentation

  Author: Lustermans, D. R. P. R. M., 2021

  Supervisor: Breeuwer, M. (Supervisor 1), Scannell, C. (External coach) & Veta, M. (Supervisor 2)

  Student thesis: Master

• Automated spinous process segmentation in X-ray images using convolutional neural networks

  Author: Roodhorst, S., 17 Dec 2018

  Supervisor: Pluim, J. (Supervisor 1) & van Walsum, T. (External person) (External coach)

  Student thesis: Master

• Automatic Cerebrovascular Segmentation of TOF-MRAs Using Deep Learning to Aid in Intracranial Aneurysm Detection

  Author: de Vos, V., 14 Jun 2021

  Supervisor: Pluim, J. P. W. (Supervisor 1), Cheplygina, V. (Supervisor 2), Wu, M. (Supervisor 2), Kuijf, H. J. (External coach) & Timmins, K. M. (External person) (External coach)

  Student thesis: Master

• Automatic myocardial scar segmentation and quantification in LGE CMR images

  Author: Borleh, A., 27 Aug 2020

  Supervisor: Pluim, J. P. W. (Supervisor 1), Breeuwer, M. (Supervisor 2) & Hilbers, P. A. J. (Supervisor 2)

  Student thesis: Master

• Biomechanical model-based deformable image registration for CT-guided percutaneous liver tumor ablation interventions

  Author: Cruts, J. M. H., 14 Jun 2021

  Supervisor: van de Vosse, F. N. (Supervisor 1), Pluim, J. P. W. (Supervisor 2), Baragona, M. (External person) (External coach), Isfort, P. (External person) (External coach) & van Walsum, T. (External person) (External coach)

  Student thesis: Master

• Brain blood perfusion and white matter integrity in accelerated cognitive ageing patiens with epilepsy

  Author: Stevens, J. C. J. M., 31 Oct 2019

  Supervisor: Breeuwer, M. (Supervisor 1), Pluim, J. (Supervisor 2), Aldenkamp, A. (Supervisor 2), Zinger, S. (Supervisor 2), Mestrom, R. (Supervisor 2) & Bernas, A. (Supervisor 2)

  Student thesis: Master

• Canonical correlation analysis on microbial and metabolite data of individuals with metabolic syndrome

  Author: van der Stam, J., 19 Jan 2019

  Supervisor: Hilbers, P. A. J. (Supervisor 1), van Riel, N. (Supervisor 2), Veta, M. (Supervisor 2), Levin, E. (External person) (External coach) & Nieuwdorp, M. (External person) (External coach)

  Student thesis: Master

• Causal candidate genes identification for familial hypercholesterolemia family based on whole-genome sequencing

  Author: Wang, Q., 31 Aug 2017

  Supervisor: Hilbers, P. A. J. (Supervisor 1), van Riel, N. A. W. (Supervisor 2), Hovingh, K. (External person) (External coach), Bosnacki, D. (Supervisor 2) & Veta, M. (Supervisor 2)

  Student thesis: Master

• Challenges for Accelerated Partial Breast Irradiation on an MR-Linac: Electron streaming effect, synthetic CT for dose calculations and plan adaptation to daily MRI

  Author: de Hond, Y. J. M., 19 Apr 2021

  Supervisor: Raaijmakers, A. J. E. (Supervisor 1), Hackett, S. L. (External person) (External coach), Houweling, A. C. (External person) (External coach), van Eijnatten, M. (Supervisor 2) & Lopata, R. G. P. (Supervisor 2)

  Student thesis: Master

• Clustered tumor phenotypes and resectability prediction for PDA using radiomic feature analysis

  Author: Janse, M. H. A., 27 Sep 2018

  Supervisor: de With, P. H. N. (Supervisor 1), Pluim, J. P. W. (Supervisor 2), Zinger, S. (Supervisor 2) & Hermans, J. J. (External person) (External coach)

  Student thesis: Master

• Content based CT retrieval for pulmonary nodules: deep metric learning based feature extraction

  Author: Aerts, T. G., 28 Feb 2019

  Supervisor: Menkovski, V. (Supervisor 1), Holenderski, M. (Supervisor 2) & Veta, M. (Supervisor 2)

  Student thesis: Master

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• Continuous arterial blood pressure estimations with the use of Photoplethysmography: A machine learning and arterial modelling approach

  Author: van Waesberge, K., 11 Oct 2021

  Supervisor: van de Vosse, F. N. (Supervisor 1), Serrarens, A. (External coach), Veta, M. (Supervisor 2), Huberts, W. (Supervisor 2) & Wijntjes, P. (Supervisor 2)

  Student thesis: Master

• Convolutional neural networks for detection of metastases in patients diagnosed with breast cancer

  Author: Nijhof, T. G., 25 Jan 2018

  Supervisor: Pluim, J. (Supervisor 1)

  Student thesis: Master

• Corneal endothelial cell segmentation and biomarker extraction in specular microscopy images using deep learning

  Author: Timmers, D. F. M., 13 Sep 2021

  Supervisor: Veta, M. (Supervisor 1), van Eijnatten, M. (Supervisor 2) & Bosnacki, D. (Supervisor 2)

  Student thesis: Master

• CycleGAN for coronay vessel segmentation

  Author: van den Bosch, P. C. J., 29 Aug 2019

  Supervisor: Pluim, J. (Supervisor 1), Bovendeerd, P. (Supervisor 2), Veta, M. (Supervisor 2) & Oliván Bescós, J. (External person) (External coach)

  Student thesis: Master

• Deep Gray Matter Segmentation in Multiple Sclerosis: a Deep Learning Approach

  Author: Koopman, K., 13 Dec 2021

  Supervisor: Breeuwer, M. (Supervisor 1), Brouwer, I. (External person) (External coach) & Vrenken, H. (External person) (External coach)

  Student thesis: Master

• Deep learning approaches for prostate cancer detection and grading in Bi-parametric MRI

  Author: de Vente, C. W., 29 Aug 2019

  Supervisor: Veta, M. (Supervisor 1), Vos, P. (External person) (External coach), van Riel, N. (Supervisor 2) & Pluim, J. (Supervisor 2)

  Student thesis: Master

• Deep learning-based analysis of bone marrow histopathology images

  Author: van Eekelen, L., 19 Apr 2021

  Supervisor: Veta, M. (Supervisor 1), Pinckaers, H. (External person) (External coach), Hebeda, K. (External person) (External coach) & Litjens, G. J. S. (External coach)

  Student thesis: Master

• Deep learning based classification of spitzoid lesions on H&E stained histopathology whole slide images

  Author: van Kerkvoorde, J. A. J. P., 27 Aug 2020

  Supervisor: Veta, M. (Supervisor 1), van Eijnatten, M. (Supervisor 2), Bosnacki, D. (Supervisor 2), Blokx, W. A. M. (External person) (External coach) & Stathonikos, N. (External person) (External coach)

  Student thesis: Master

• Deep Learning-based Hyperspectral Imaging: an intraoperative margin assessment technique for improving breast cancer surgery

  Author: de Kruif, N., 11 Oct 2021

  Supervisor: Pluim, J. P. W. (Supervisor 1), van Eijnatten, M. (Supervisor 2) & Bosnacki, D. (Supervisor 2)

  Student thesis: Master

• Deep learning-based synthetic CT generation for brain MR-only radiotherapy: a multi-view approach on heterogeneous MRI of pediatric patients

  Author: Bentvelzen, L. G., 27 Aug 2020

  Supervisor: Breeuwer, M. (Supervisor 1), Maspero, M. (External person) (External coach) & Philippens, M. E. P. (External person) (External coach)

  Student thesis: Master

• Deep learning for the detection of cerebral microinfarcts in MR images

  Author: Volmer, L. F., 31 Oct 2019

  Supervisor: Pluim, J. (Supervisor 1), Veta, M. (Supervisor 2) & van Riel, N. (Supervisor 2)

  Student thesis: Master

• Deep Learning for Ultrasound Beamforming in the Radon Domain

  Author: Jansen, G. E., 13 Sep 2021

  Supervisor: Lopata, R. G. P. (Supervisor 1), Schwab, H. (Supervisor 2), Awasthi, N. (Supervisor 2), van Eijnatten, M. (Supervisor 2) & van Sambeek, M. R. H. M. (Supervisor 2)

  Student thesis: Master

• Detection of Ductal Carcinoma in Situ in Whole-Slide Images Using Deep Learning

  Author: Janssen, D. W. H., 13 Dec 2021

  Supervisor: Veta, M. (Supervisor 1), Breeuwer, M. (Supervisor 2) & Bosnacki, D. (Supervisor 2)

  Student thesis: Master

• Developing a fluid-structure interaction model to study intraluminal thrombus in abdominal aorta aneurysms

  Author: Fonken, J. H. C., 27 Aug 2020

  Supervisor: Lopata, R. G. P. (Supervisor 1), van de Vosse, F. N. (Supervisor 2), van Sambeek, M. R. H. M. (Supervisor 2), Raaijmakers, A. J. E. (Supervisor 2) & Nievergeld, A. H. M. (Supervisor 2)

  Student thesis: Master

• Development and evaluation of radiation therapy dose distribution prediction models for breast cancer

  Author: Bakx, N. L. M., 27 Aug 2020

  Supervisor: Pluim, J. P. W. (Supervisor 1), Hurkmans, C. (External coach), Bluemink, H. (External coach) & Hagelaar, E. (External person) (External coach)

  Student thesis: Master

• Diffusion tensor residuals as a potential biomarker for brain tissue damage

  Author: van Rijn, A. P., 23 Apr 2020

  Supervisor: Pluim, J. P. W. (Supervisor 1), Leemans, A. L. G. (External person) (External coach) & de Luca, A. (External person) (External coach)

  Student thesis: Master

• Dosimetric Evaluation of Central Lung SBRT on the MR-linac: a Case Series

  Author: van den Dobbelsteen, M., 22 Feb 2021

  Supervisor: Raaijmakers, A. J. E. (Supervisor 1), van Eijnatten, M. (Supervisor 2), Foolen, J. (Supervisor 2), Hackett, S. L. (External person) (External coach) & Fast, M. F. (External person) (External coach)

  Student thesis: Master

• Exploring Brain Connectivity in Ageing Using Explainable Deep Learning

  Author: van Asch, T. G., 2021

  Supervisor: Breeuwer, M. (Supervisor 1), Jansen, J. F. A. (External coach) & de Jong, N. (External person) (External coach)

  Student thesis: Master

• Effect of SNR and user-defined tractography parameters on group analyses of diffusion tensor metrics

  Author: Vos, I. N., 27 Feb 2020

  Supervisor: Breeuwer, M. (Supervisor 1), Leemans, A. L. G. (External person) (External coach) & de Luca, A. (External person) (External coach)

  Student thesis: Master

• Feasibility of MRI-guided Radiotherapy for Head-and-Neck Cancer on a 1.5T MR-Linac: MR-Linac treatment plan evaluation, robustness of MR-Linac planning and the electron return effect

  Author: Massop, S., 19 Apr 2021

  Supervisor: Pluim, J. P. W. (Supervisor 1), Philippens, M. E. P. (External person) (External coach), Raaijmakers, A. J. E. (Supervisor 2) & van Rietbergen, B. (Supervisor 2)

  Student thesis: Master

• From hyperspectral data cube to tumor prediction

  Author: Weijtmans, P. J. C., 20 Jun 2019

  Supervisor: Pluim, J. (Supervisor 1) & Shan, C. (Supervisor 2)

  Student thesis: Master

• Improved image guidance for CT-guided ablation of liver tumours

  Author: Babijn, A., 27 Aug 2020

  Supervisor: Pluim, J. P. W. (Supervisor 1), van Walsum, T. (External person) (External coach), Federica, F. (External person) (External coach) & van Eijnatten, M. (Supervisor 2)

  Student thesis: Master

• Improving algorithm evaluation in medical imaging segmentation challenges

  Author: Michels, B. E. J., 18 Jun 2020

  Supervisor: Cheplygina, V. (Supervisor 1), Pluim, J. P. W. (Supervisor 2) & Bosnacki, D. (Supervisor 2)

  Student thesis: Master

• Improving Lesion-Symptom Mapping in Brain Imaging By Using Deep Learning and Explainable AI

  Author: Bunk, S., 13 Dec 2021

  Supervisor: Veta, M. (Supervisor 1), Breeuwer, M. (Supervisor 2), Huberts, W. (External coach) & Kuijf, H. (External coach)

  Student thesis: Master

• Incorporating Neighbouring Image Information to Improve DMEK Graft Detachment Quantification in Radial OCT Scans

  Author: van der Velden, B. M., 13 Dec 2021

  Supervisor: Pluim, J. (Supervisor 1), Veta, M. (Supervisor 2) & Bosnacki, D. (Supervisor 2)

  Student thesis: Master

• Influence of image artifacts on image-based electrophysiological simulations using synthetic XCAT phantom and clinical LGE MR images

  Author: Kruithof, E., 27 Aug 2020

  Supervisor: Breeuwer, M. (Supervisor 1), Bovendeerd, P. H. M. (Supervisor 2), Veta, M. (Supervisor 2) & Lau, K. D. (External person) (External coach)

  Student thesis: Master

• Intracranial CSF pulsatility measurement using 7T MRI

  Author: van Gruijthuijsen, D. S. C., 22 Feb 2021

  Supervisor: Raaijmakers, A. J. E. (Supervisor 1), Breeuwer, M. (Supervisor 2), Lopata, R. G. P. (Supervisor 2) & Zwanenburg, J. J. M. (External person) (External coach)

  Student thesis: Master

• Intravascular ultrasound simulator for abdominal aortic aneurysms to segment the artery wall

  Author: van Aarle, D. A. C., 2021

  Supervisor: Lopata, R. G. P. (Supervisor 1), van Sambeek, M. R. H. M. (Supervisor 2), Raaijmakers, A. J. E. (Supervisor 2), Fasen, F. (Supervisor 2), de Bruijn, F. J. (External person) (External coach) & Schmeitz, H. A. W. (External person) (External coach)

  Student thesis: Master

• In vivo assessment of the subchondral bone plate in patients with knee osteoarthritis using second generation HR-pQCT

  Author: van Mourik, M., 28 Mar 2019

  Supervisor: Ito, K. (Supervisor 1), van Rietbergen, B. (Supervisor 2), Breeuwer, M. (Supervisor 2), van den Bergh, J. P. W. (External person) (External coach), Geusens, P. P. M. M. (External person) (External coach) & Wyers, C. E. (External person) (External coach)

  Student thesis: Master

• Localization stability of weakly supervised deep neural networks

  Author: Romanova, R. N., 5 Mar 2020

  Supervisor: Cheplygina, V. (Supervisor 1), Vanschoren, J. (Supervisor 2) & Yakovets, N. (Supervisor 2)

  Student thesis: Master

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• Mapping the homunculus in sensorimotor cortex using fMRI

  Author: Bakker, C. A., 28 Sep 2017

  Supervisor: Pluim, J. P. W. (Supervisor 1), Cheplygina, V. (Supervisor 2), Markvoort, A. J. (Supervisor 2) & Schellekens, W. (External person) (External coach)

  Student thesis: Master

• Meta-learning for medical image segmentation

  Author: van Sonsbeek, T. J., 19 Dec 2019

  Supervisor: Cheplygina, V. (Supervisor 1), Pluim, J. P. W. (Supervisor 2) & van Riel, N. A. W. (Supervisor 2)

  Student thesis: Master

• Modelling the hemodynamic effects of enhanched external counterpulsation

  Author: Hilhorst, P. L. J., 13 Sep 2021

  Supervisor: van de Vosse, F. N. (Supervisor 1), Huberts, W. (Supervisor 2), Du, J. (External person) (External coach), Veta, M. (Supervisor 2) & Sels, J. W. (External coach)

  Student thesis: Master

• Molecular dynamics simulations with PumMa on a graphical processing unit

  Author: de Koning, D. A. M., 2021

  Supervisor: Hilbers, P. A. J. (Supervisor 1), Markvoort, A. J. (Supervisor 2) & Veta, M. (Supervisor 2)

  Student thesis: Master