Student theses
3D medical image segmentation with labeled and unlabeled data using autoencoders
Author: Sital, C., 28 Nov 2019Supervisor: Raaijmakers, A. (Supervisor 1), Weese, J. (External person) (External coach) & Brosch, T. (External person) (External coach)
Student thesis: Master
A computational biology framework: a data analysis tool to support biomedical engineers in their research
Author: Beishuizen, T., 29 Nov 2018Supervisor: Bosnacki, D. (Supervisor 1), Cheplygina, V. (Supervisor 2), Hilbers, P. (Supervisor 2), Fletcher, G. (Supervisor 2) & Vanschoren, J. (Supervisor 2)
Student thesis: Master
Analyzing the relation between brain lesions and short association fibers using diffusion MRI
Author: Kamps, J., Jun 2017Supervisor: Sepasian, N. (Supervisor 1), Fuster, A. (Supervisor 2) & Pluim, J. (Supervisor 2)
Student thesis: Master
Automated spinous process segmentation in X-ray images using convolutional neural networks
Author: Roodhorst, S., 17 Dec 2018Supervisor: Pluim, J. (Supervisor 1) & Walsum, van, T. (External person) (External coach)
Student thesis: Master
Brain blood perfusion and white matter integrity in accelerated cognitive ageing patiens with epilepsy
Author: Stevens, J., 31 Oct 2019Supervisor: Breeuwer, M. (Supervisor 1), Pluim, J. (Supervisor 2), Aldenkamp, A. (Supervisor 2), Zinger, S. (Supervisor 2), Mestrom, R. (Supervisor 2) & Bernas, A. (Supervisor 2)
Student thesis: Master
Canonical correlation analysis on microbial and metabolite data of individuals with metabolic syndrome
Author: van der Stam, J., 19 Jan 2019Supervisor: Hilbers, P. (Supervisor 1), van Riel, N. (Supervisor 2), Veta, M. (Supervisor 2), Levin, E. (External person) (External coach) & Nieuwdorp, M. (External person) (External coach)
Student thesis: Master
Causal candidate genes identification for familial hypercholesterolemia family based on whole-genome sequencing
Author: Wang, Q., 31 Aug 2017Supervisor: Hilbers, P. (Supervisor 1), van Riel, N. (Supervisor 2), Hovingh, K. (External person) (External coach), Bosnacki, D. (Supervisor 2) & Veta, M. (Supervisor 2)
Student thesis: Master
Clustered tumor phenotypes and resectability prediction for PDA using radiomic feature analysis
Author: Janse, M. H., 27 Sep 2018Supervisor: de With, P. (Supervisor 1), Pluim, J. (Supervisor 2), Zinger, S. (Supervisor 2) & Hermans, J. (External person) (External coach)
Student thesis: Master
Content based CT retrieval for pulmonary nodules: deep metric learning based feature extraction
Author: Aerts, T., 28 Feb 2019Supervisor: Menkovski, V. (Supervisor 1), Holenderski, M. (Supervisor 2) & Veta, M. (Supervisor 2)
Student thesis: Master
Convolutional neural networks for detection of metastases in patients diagnosed with breast cancer
Author: Nijhof, T., 25 Jan 2018Supervisor: Pluim, J. (Supervisor 1)
Student thesis: Master
CycleGAN for coronay vessel segmentation
Author: van den Bosch, P., 29 Aug 2019Supervisor: Pluim, J. (Supervisor 1), Bovendeerd, P. (Supervisor 2), Veta, M. (Supervisor 2) & Oliván-Bescós, J. (External person) (External coach)
Student thesis: Master
Deep learning approaches for prostate cancer detection and grading in Bi-parametric MRI
Author: de Vente, C., 29 Aug 2019Supervisor: Veta, M. (Supervisor 1), Vos, P. (External person) (External coach), van Riel, N. (Supervisor 2) & Pluim, J. (Supervisor 2)
Student thesis: Master
Deep learning for the detection of cerebral microinfarcts in MR images
Author: Volmer, L., 31 Oct 2019Supervisor: Pluim, J. (Supervisor 1), Veta, M. (Supervisor 2) & van Riel, N. (Supervisor 2)
Student thesis: Master
Effect of SNR and user-defined tractography parameters on group analyses of diffusion tensor metrics
Author: Vos, I., 27 Feb 2020Supervisor: Breeuwer, M. (Supervisor 1), Leemans, A. L. (External person) (External coach) & De Luca, A. (External person) (External coach)
Student thesis: Master
From hyperspectral data cube to tumor prediction
Author: Weijtmans, P., 20 Jun 2019Supervisor: Pluim, J. (Supervisor 1) & Shan, C. (Supervisor 2)
Student thesis: Master
In vivo assessment of the subchondral bone plate in patients with knee osteoarthritis using second generation HR-pQCT
Author: van Mourik, M., 28 Mar 2019Supervisor: Ito, K. (Supervisor 1), van Rietbergen, B. (Supervisor 2), Breeuwer, M. (Supervisor 2), van den Bergh, J. P. (External person) (External coach), Geusens, P. P. (External person) (External coach) & Wyers, C. E. (External person) (External coach)
Student thesis: Master
Mapping the homunculus in sensorimotor cortex using fMRI
Author: Bakker, C., 28 Sep 2017Supervisor: Pluim, J. (Supervisor 1), Cheplygina, V. (Supervisor 2), Markvoort, A. (Supervisor 2) & Schellekens, W. (External person) (External coach)
Student thesis: Master
Meta-learning for medical image segmentation
Author: van Sonsbeek, T., 19 Dec 2019Supervisor: Cheplygina, V. (Supervisor 1), Pluim, J. P. (Supervisor 2) & van Riel, N. A. (Supervisor 2)
Student thesis: Master
Neuromelanin imaging using magnetization transfer MRI at 7T
Author: van Boxel, S., 31 Aug 2017Supervisor: Pluim, J. (Supervisor 1), Priovoulos, N. (External person) (External coach), Jacobs, H. (External person) (External coach) & Ivanov, D. (External person) (External coach)
Student thesis: Master
Open implementation and evaluation of transverse oscillations using high frame rate single acquisitions
Author: van Hees, R., 21 Jun 2018Supervisor: van de Vosse, F. (Supervisor 1), Lopata, R. (Supervisor 2), Arabul, M. (Supervisor 2), Breeuwer, M. (Supervisor 2) & Belt, H. (Supervisor 2)
Student thesis: Master
Primary tumor origin classification of lung nodules in spectral CT using transfer learning
Author: Hesse, L., 20 Jun 2019Supervisor: Pluim, J. (Supervisor 1), de Jong, P. A. (External person) (External coach), Cheplygina, V. (Supervisor 2) & Eduati, F. (Supervisor 2)
Student thesis: Master
Real-time fMRI: multi-echo acquisition as a method for physiological confound reduction
Author: Versteijlen, M., 29 Aug 2019Supervisor: Pluim, J. (Supervisor 1), Breeuwer, M. (Supervisor 2) & van Rietbergen, B. (Supervisor 2)
Student thesis: Master
Real-time fMRI for therapeutic applications: investigation into distortion and motion correction
Author: van der Burg, C., 30 Aug 2018Supervisor: Breeuwer, M. (Supervisor 1) & Lamerichs, R. (Supervisor 2)
Student thesis: Master
Re-referencing methods for high-density electrocorticographic signals: evaluating alternatives of common average re-referencing
Author: Pilmeyer, J., 29 Nov 2018Supervisor: Pluim, J. (Supervisor 1), Cheplygina, V. (Supervisor 2), Eduati, F. (Supervisor 2), Freudenburg, Z. (External person) (External coach) & Branco, M. (External person) (External coach)
Student thesis: Master
Respiratory correlated four-dimensional T2-weighted Turbo Spin Echo MRI using Cartesian-Spiral K-space sampling trajectory
Author: Akdag, O., 28 Nov 2019Supervisor: Pluim, J. P. (Supervisor 1), Raaijmakers, A. (Supervisor 2), Loerakker, S. (Supervisor 2) & Tijssen, R. (External person) (External coach)
Student thesis: Master
Retinal structure recognition in images reconstructed from A-Scans of an OCT-probe
Author: Weijers, R., 23 Feb 2017Supervisor: Pluim, J. (Supervisor 1), ter Haar Romenij, B. (Supervisor 2), Steinbuch, M. (Supervisor 2), van de Molengraft, M. (Supervisor 2) & Douven, Y. (Supervisor 2)
Student thesis: Master
Segmentation and classification of skin cancer in histopathological whole slide images
Author: van Zon, M., 28 Nov 2019Supervisor: Pluim, J. P. (Supervisor 1), Veta, M. (Supervisor 2), Eduati, F. (Supervisor 2), van Diest, P. J. (External person) (External coach) & Stathonikos, N. (External person) (External coach)
Student thesis: Master
Segmentation techniques for the visible mouse
Author: Panday, V., 30 Jun 2003Supervisor: ter Haar Romenij, B. (Supervisor 1), van den Bosch, P. (Supervisor 2) & Strijkers, G. (Supervisor 2)
Student thesis: Master
Study on the excitability of the brain and its relation to functional MRI connectivity in patients with focal epilepsy
Author: Meijer, A., 23 Feb 2017Supervisor: Ossenblok, P. (Supervisor 1)
Student thesis: Master
Tackling B1+ inhomogeneity problems at high field MRI to be able to predict neoadjuvant chemotherapy response in breast cancer patients
Author: Elschot, E., 30 Jan 2020Supervisor: Raaijmakers, A. (Supervisor 1), Breeuwer, M. (Supervisor 2), Eduati, F. (Supervisor 2), Wijnen, J. P. (External coach) & van den Wildenberg, L. (External coach)
Student thesis: Master
The effect of resolution on bone mechanical properties in the human distal radius assessed by finite element analysis: a comparison between HR-pQCT and QCT resolution scans and between HR-pQCT generations
Author: Voermans, A., 29 Mar 2018Supervisor: Ito, K. (Supervisor 1), van Rietbergen, B. (Supervisor 2), van den Bergh, J. P. (External person) (External coach), Arts, J. (. (Supervisor 2), Pluim, J. (Supervisor 2) & de Jong, J. (Supervisor 2)
Student thesis: Master
Towards respiratory motion correction in PET through non-rigid MRI registration guided by ultrasound synchronization
Author: Belsley, G., 30 Aug 2018Supervisor: Pluim, J. (Supervisor 1) & Madore, B. (External person) (External coach)
Student thesis: Master
Vessel feature learning using a foveal fully convolutional neural network
Author: Tio, D., 19 Dec 2019Supervisor: Breeuwer, M. (Supervisor 1), Pluim, J. P. (Supervisor 2), van de Vosse, F. N. (Supervisor 1) & Weese, J. (External person) (External coach)
Student thesis: Master
X-ray image denoising using deep-learning
Author: Giurgia, M., 29 Aug 2019Supervisor: Pluim, J. (Supervisor 1), Markvoort, B. (Supervisor 2), Veta, M. (Supervisor 2), Oliván-Bescós, J. (External person) (External coach) & Rongen, P. (External person) (External coach)
Student thesis: Master
X-ray scatter correction using sinusoidal modulation
Author: Pieters, M., 30 Mar 2017Supervisor: Ruijters, D. (Supervisor 1) & Pluim, J. (Supervisor 2)
Student thesis: Master