Medical Image Analysis

Search results

• 3D medical image segmentation with labeled and unlabeled data using autoencoders

  Author: Sital, C., 28 Nov 2019

  Supervisor: Raaijmakers, A. (Supervisor 1), Weese, J. (External person) (External coach) & Brosch, T. (External person) (External coach)

  Student thesis: Master

• A computational biology framework: a data analysis tool to support biomedical engineers in their research

  Author: Beishuizen, T., 29 Nov 2018

  Supervisor: Bosnacki, D. (Supervisor 1), Cheplygina, V. (Supervisor 2), Hilbers, P. (Supervisor 2), Fletcher, G. (Supervisor 2) & Vanschoren, J. (Supervisor 2)

  Student thesis: Master

• Analyzing the relation between brain lesions and short association fibers using diffusion MRI

  Author: Kamps, J., Jun 2017

  Supervisor: Sepasian, N. (Supervisor 1), Fuster, A. (Supervisor 2) & Pluim, J. (Supervisor 2)

  Student thesis: Master

• Automated spinous process segmentation in X-ray images using convolutional neural networks

  Author: Roodhorst, S., 17 Dec 2018

  Supervisor: Pluim, J. (Supervisor 1) & van Walsum, T. (External person) (External coach)

  Student thesis: Master

• Automatic myocardial scar segmentation and quantification in LGE CMR images

  Author: Borleh, A., 27 Aug 2020

  Supervisor: Pluim, J. P. (Supervisor 1), Breeuwer, M. (Supervisor 2) & Hilbers, P. A. (Supervisor 2)

  Student thesis: Master

• Brain blood perfusion and white matter integrity in accelerated cognitive ageing patiens with epilepsy

  Author: Stevens, J., 31 Oct 2019

  Supervisor: Breeuwer, M. (Supervisor 1), Pluim, J. (Supervisor 2), Aldenkamp, A. (Supervisor 2), Zinger, S. (Supervisor 2), Mestrom, R. (Supervisor 2) & Bernas, A. (Supervisor 2)

  Student thesis: Master

• Canonical correlation analysis on microbial and metabolite data of individuals with metabolic syndrome

  Author: van der Stam, J., 19 Jan 2019

  Supervisor: Hilbers, P. (Supervisor 1), van Riel, N. (Supervisor 2), Veta, M. (Supervisor 2), Levin, E. (External person) (External coach) & Nieuwdorp, M. (External person) (External coach)

  Student thesis: Master

• Causal candidate genes identification for familial hypercholesterolemia family based on whole-genome sequencing

  Author: Wang, Q., 31 Aug 2017

  Supervisor: Hilbers, P. (Supervisor 1), van Riel, N. (Supervisor 2), Hovingh, K. (External person) (External coach), Bosnacki, D. (Supervisor 2) & Veta, M. (Supervisor 2)

  Student thesis: Master

• Clustered tumor phenotypes and resectability prediction for PDA using radiomic feature analysis

  Author: Janse, M. H., 27 Sep 2018

  Supervisor: de With, P. (Supervisor 1), Pluim, J. (Supervisor 2), Zinger, S. (Supervisor 2) & Hermans, J. (External person) (External coach)

  Student thesis: Master

• Content based CT retrieval for pulmonary nodules: deep metric learning based feature extraction

  Author: Aerts, T., 28 Feb 2019

  Supervisor: Menkovski, V. (Supervisor 1), Holenderski, M. (Supervisor 2) & Veta, M. (Supervisor 2)

  Student thesis: Master

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• Convolutional neural networks for detection of metastases in patients diagnosed with breast cancer

  Author: Nijhof, T., 25 Jan 2018

  Supervisor: Pluim, J. (Supervisor 1)

  Student thesis: Master

• CycleGAN for coronay vessel segmentation

  Author: van den Bosch, P., 29 Aug 2019

  Supervisor: Pluim, J. (Supervisor 1), Bovendeerd, P. (Supervisor 2), Veta, M. (Supervisor 2) & Oliván-Bescós, J. (External person) (External coach)

  Student thesis: Master

• Deep learning approaches for prostate cancer detection and grading in Bi-parametric MRI

  Author: de Vente, C., 29 Aug 2019

  Supervisor: Veta, M. (Supervisor 1), Vos, P. (External person) (External coach), van Riel, N. (Supervisor 2) & Pluim, J. (Supervisor 2)

  Student thesis: Master

• Deep learning based classification of spitzoid lesions on H&E stained histopathology whole slide images

  Author: van Kerkvoorde, J., 27 Aug 2020

  Supervisor: Veta, M. (Supervisor 1), van Eijnatten, M. (Supervisor 2), Bosnacki, D. (Supervisor 2), Blokx, W. A. (External person) (External coach) & Stathonikos, N. (External person) (External coach)

  Student thesis: Master

• Deep learning-based synthetic CT generation for brain MR-only radiotherapy: a multi-view approach on heterogeneous MRI of pediatric patients

  Author: Bentvelzen, L., 27 Aug 2020

  Supervisor: Breeuwer, M. (Supervisor 1), Maspero, M. (External person) (External coach) & Philippens, M. E. (External person) (External coach)

  Student thesis: Master

• Deep learning for the detection of cerebral microinfarcts in MR images

  Author: Volmer, L., 31 Oct 2019

  Supervisor: Pluim, J. (Supervisor 1), Veta, M. (Supervisor 2) & van Riel, N. (Supervisor 2)

  Student thesis: Master

• Developing a fluid-structure interaction model to study intraluminal thrombus in abdominal aorta aneurysms

  Author: Fonken, J., 27 Aug 2020

  Supervisor: Lopata, R. G. (Supervisor 1), van de Vosse, F. N. (Supervisor 2), van Sambeek, M. R. (Supervisor 2), Raaijmakers, A. J. (Supervisor 2) & Nievergeld, A. H. (Supervisor 2)

  Student thesis: Master

• Development and evaluation of radiation therapy dose distribution prediction models for breast cancer

  Author: Bakx, N., 27 Aug 2020

  Supervisor: Pluim, J. P. (Supervisor 1), Hurkmans, C. (External coach), Bluemink, H. (External coach) & Hagelaar, E. (External person) (External coach)

  Student thesis: Master

• Diffusion tensor residuals as a potential biomarker for brain tissue damage

  Author: van Rijn, A., 23 Apr 2020

  Supervisor: Pluim, J. P. (Supervisor 1), Leemans, A. L. (External person) (External coach) & De Luca, A. (External person) (External coach)

  Student thesis: Master

• Dosimetric evaluation of central lung SBRT on the MR-linac: a case series

  Author: van den Dobbelsteen, M., 24 Sep 2020

  Supervisor: Raaijmakers, A. J. (Supervisor 1), Hackett, S. (External person) (External coach) & Fast, M. (External person) (External coach)

  Student thesis: Master

• Effect of SNR and user-defined tractography parameters on group analyses of diffusion tensor metrics

  Author: Vos, I., 27 Feb 2020

  Supervisor: Breeuwer, M. (Supervisor 1), Leemans, A. L. (External person) (External coach) & De Luca, A. (External person) (External coach)

  Student thesis: Master

• From hyperspectral data cube to tumor prediction

  Author: Weijtmans, P., 20 Jun 2019

  Supervisor: Pluim, J. (Supervisor 1) & Shan, C. (Supervisor 2)

  Student thesis: Master

• Improved image guidance for CT-guided ablation of liver tumours

  Author: Babijn, A., 27 Aug 2020

  Supervisor: Pluim, J. P. (Supervisor 1), van Walsum, T. (External person) (External coach), Federica, F. (External person) (External coach) & van Eijnatten, M. (Supervisor 2)

  Student thesis: Master

• Improving algorithm evaluation in medical imaging segmentation challenges

  Author: Michels, B., 18 Jun 2020

  Supervisor: Cheplygina, V. (Supervisor 1), Pluim, J. P. (Supervisor 2) & Bosnacki, D. (Supervisor 2)

  Student thesis: Master

• Influence of image artifacts on image-based electrophysiological simulations using synthetic XCAT phantom and clinical LGE MR images

  Author: Kruithof, E., 27 Aug 2020

  Supervisor: Breeuwer, M. (Supervisor 1), Bovendeerd, P. H. (Supervisor 2), Veta, M. (Supervisor 2) & Lau, K. (External person) (External coach)

  Student thesis: Master

• In vivo assessment of the subchondral bone plate in patients with knee osteoarthritis using second generation HR-pQCT

  Author: van Mourik, M., 28 Mar 2019

  Supervisor: Ito, K. (Supervisor 1), van Rietbergen, B. (Supervisor 2), Breeuwer, M. (Supervisor 2), van den Bergh, J. P. (External person) (External coach), Geusens, P. P. (External person) (External coach) & Wyers, C. E. (External person) (External coach)

  Student thesis: Master

• Localization stability of weakly supervised deep neural networks

  Author: Romanova, R., 5 Mar 2020

  Supervisor: Cheplygina, V. (Supervisor 1), Vanschoren, J. (Supervisor 2) & Yakovets, N. (Supervisor 2)

  Student thesis: Master

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• Mapping the homunculus in sensorimotor cortex using fMRI

  Author: Bakker, C., 28 Sep 2017

  Supervisor: Pluim, J. (Supervisor 1), Cheplygina, V. (Supervisor 2), Markvoort, A. (Supervisor 2) & Schellekens, W. (External person) (External coach)

  Student thesis: Master

• Meta-learning for medical image segmentation

  Author: van Sonsbeek, T., 19 Dec 2019

  Supervisor: Cheplygina, V. (Supervisor 1), Pluim, J. P. (Supervisor 2) & van Riel, N. A. (Supervisor 2)

  Student thesis: Master

• MR-STAT in the brain and beyond

  Author: Grimbergen, G., 27 Aug 2020

  Supervisor: Raaijmakers, A. J. (Supervisor 1), Lopata, R. G. (Supervisor 2), Breeuwer, M. (Supervisor 2), Mandija, S. (External person) (External coach) & Bruijnen, T. (External coach)

  Student thesis: Master

• Neuromelanin imaging using magnetization transfer MRI at 7T

  Author: van Boxel, S., 31 Aug 2017

  Supervisor: Pluim, J. (Supervisor 1), Priovoulos, N. (External person) (External coach), Jacobs, H. (External person) (External coach) & Ivanov, D. (External person) (External coach)

  Student thesis: Master

• Open implementation and evaluation of transverse oscillations using high frame rate single acquisitions

  Author: van Hees, R., 21 Jun 2018

  Supervisor: van de Vosse, F. (Supervisor 1), Lopata, R. (Supervisor 2), Arabul, M. (Supervisor 2), Breeuwer, M. (Supervisor 2) & Belt, H. (Supervisor 2)

  Student thesis: Master

• Optimising time-efficiency of subtle blood-brain barrier leakage measurement by using an interleaved MRI protocol

  Author: Voorter, P., 27 Aug 2020

  Supervisor: Pluim, J. P. (Supervisor 1), Jansen, J. F. (Supervisor 2), Veta, M. (Supervisor 2) & Huberts, W. (Supervisor 2)

  Student thesis: Master

• Optimization and integration of image analysis techniques for myocardial perfusion imaging

  Author: van Wanrooij, M., 27 Aug 2020

  Supervisor: Lopata, R. G. (Supervisor 1), Peters, C. H. (External coach), van Eijnatten, M. (Supervisor 2) & Huberts, W. (Supervisor 2)

  Student thesis: Master

• Primary tumor origin classification of lung nodules in spectral CT using transfer learning

  Author: Hesse, L., 20 Jun 2019

  Supervisor: Pluim, J. (Supervisor 1), de Jong, P. A. (External person) (External coach), Cheplygina, V. (Supervisor 2) & Eduati, F. (Supervisor 2)

  Student thesis: Master

• Real-time fMRI: multi-echo acquisition as a method for physiological confound reduction

  Author: Versteijlen, M., 29 Aug 2019

  Supervisor: Pluim, J. (Supervisor 1), Breeuwer, M. (Supervisor 2) & van Rietbergen, B. (Supervisor 2)

  Student thesis: Master

• Real-time fMRI for therapeutic applications: investigation into distortion and motion correction

  Author: van der Burg, C., 30 Aug 2018

  Supervisor: Breeuwer, M. (Supervisor 1) & Lamerichs, R. (Supervisor 2)

  Student thesis: Master

• Re-referencing methods for high-density electrocorticographic signals: evaluating alternatives of common average re-referencing

  Author: Pilmeyer, J., 29 Nov 2018

  Supervisor: Pluim, J. (Supervisor 1), Cheplygina, V. (Supervisor 2), Eduati, F. (Supervisor 2), Freudenburg, Z. (External person) (External coach) & Branco, M. (External person) (External coach)

  Student thesis: Master

• Respiratory correlated four-dimensional T2-weighted Turbo Spin Echo MRI using Cartesian-Spiral K-space sampling trajectory

  Author: Akdag, O., 28 Nov 2019

  Supervisor: Pluim, J. P. (Supervisor 1), Raaijmakers, A. (Supervisor 2), Loerakker, S. (Supervisor 2) & Tijssen, R. (External person) (External coach)

  Student thesis: Master

• Retinal structure recognition in images reconstructed from A-Scans of an OCT-probe

  Author: Weijers, R., 23 Feb 2017

  Supervisor: Pluim, J. (Supervisor 1), ter Haar Romenij, B. (Supervisor 2), Steinbuch, M. (Supervisor 2), van de Molengraft, M. (Supervisor 2) & Douven, Y. (Supervisor 2)

  Student thesis: Master

• Segmentation and classification of skin cancer in histopathological whole slide images

  Author: van Zon, M., 28 Nov 2019

  Supervisor: Pluim, J. P. (Supervisor 1), Veta, M. (Supervisor 2), Eduati, F. (Supervisor 2), van Diest, P. J. (External person) (External coach) & Stathonikos, N. (External person) (External coach)

  Student thesis: Master

• Segmentation techniques for the visible mouse

  Author: Panday, V., 30 Jun 2003

  Supervisor: ter Haar Romenij, B. (Supervisor 1), van den Bosch, P. (Supervisor 2) & Strijkers, G. (Supervisor 2)

  Student thesis: Master

• Study on the excitability of the brain and its relation to functional MRI connectivity in patients with focal epilepsy

  Author: Meijer, A., 23 Feb 2017

  Supervisor: Ossenblok, P. (Supervisor 1)

  Student thesis: Master

• Tackling B1+ inhomogeneity problems at high field MRI to be able to predict neoadjuvant chemotherapy response in breast cancer patients

  Author: Elschot, E., 30 Jan 2020

  Supervisor: Raaijmakers, A. (Supervisor 1), Breeuwer, M. (Supervisor 2), Eduati, F. (Supervisor 2), Wijnen, J. P. (External coach) & van den Wildenberg, L. (External coach)

  Student thesis: Master

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• The effect of deriving parametric maps with artificial neural networks on proton beam dose calculations

  Author: van Wagenberg, T., 28 May 2020

  Supervisor: Raaijmakers, A. J. (Supervisor 1), Cheplygina, V. (Supervisor 2) & Lopata, R. G. (Supervisor 2)

  Student thesis: Master

• The effect of resolution on bone mechanical properties in the human distal radius assessed by finite element analysis: a comparison between HR-pQCT and QCT resolution scans and between HR-pQCT generations

  Author: Voermans, A., 29 Mar 2018

  Supervisor: Ito, K. (Supervisor 1), van Rietbergen, B. (Supervisor 2), van den Bergh, J. P. (External person) (External coach), Arts, J. (. (Supervisor 2), Pluim, J. (Supervisor 2) & de Jong, J. (Supervisor 2)

  Student thesis: Master

• Towards respiratory motion correction in PET through non-rigid MRI registration guided by ultrasound synchronization

  Author: Belsley, G., 30 Aug 2018

  Supervisor: Pluim, J. (Supervisor 1) & Madore, B. (External person) (External coach)

  Student thesis: Master

• Vessel feature learning using a foveal fully convolutional neural network

  Author: Tio, D., 19 Dec 2019

  Supervisor: Breeuwer, M. (Supervisor 1), Pluim, J. P. (Supervisor 2), van de Vosse, F. N. (Supervisor 1) & Weese, J. (External person) (External coach)

  Student thesis: Master

• X-ray image denoising using deep-learning

  Author: Giurgia, M., 29 Aug 2019

  Supervisor: Pluim, J. (Supervisor 1), Markvoort, B. (Supervisor 2), Veta, M. (Supervisor 2), Oliván-Bescós, J. (External person) (External coach) & Rongen, P. (External person) (External coach)

  Student thesis: Master

• X-ray scatter correction using sinusoidal modulation

  Author: Pieters, M., 30 Mar 2017

  Supervisor: Ruijters, D. (Supervisor 1) & Pluim, J. (Supervisor 2)

  Student thesis: Master