Student theses
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3D Camera Monitoring of Rodent Irradiation Geometry for High Precision Shielding
Author: Slegt, V. J., 29 Sept 2022Supervisor: Raaijmakers, A. J. E. (Supervisor 1), Pluim, J. P. W. (Supervisor 2), Schwab, H. (Supervisor 2), Staut, N. (External person) (External coach) & Verhaegen, F. J. W. (External person) (External coach)
Student thesis: Master
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3D medical image segmentation with labeled and unlabeled data using autoencoders
Author: Sital, C. K., 28 Nov 2019Supervisor: Raaijmakers, A. (Supervisor 1), Weese, J. (External person) (External coach) & Brosch, T. (External person) (External coach)
Student thesis: Master
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A computational biology framework: a data analysis tool to support biomedical engineers in their research
Author: Beishuizen, T. P. A., 29 Nov 2018Supervisor: Bosnacki, D. (Supervisor 1), Cheplygina, V. (Supervisor 2), Hilbers, P. A. J. (Supervisor 2), Fletcher, G. (Supervisor 2) & Vanschoren, J. (Supervisor 2)
Student thesis: Master
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A Functionalized Anatomical Model for Transcutaneous Electrical Stimulation of the Spinal Cord to Improve Upper Extremity Motor Function
Author: de Graaf, M. A. F. A., 13 Sept 2021Supervisor: Raaijmakers, A. J. E. (Supervisor 1), Pluim, J. P. W. (Supervisor 2), Lopata, R. G. P. (Supervisor 2) & Paoles, E. (External coach)
Student thesis: Master
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Altered Global Organization of Structural Covariance Networks Relate to Childhood Absence Epilepsy
Author: Eussen, M. J. A., 2022Supervisor: Breeuwer, M. (Supervisor 1), Drenthen, G. S. (External coach), Bosnacki, D. (Supervisor 2) & Scannell, C. (Supervisor 2)
Student thesis: Master
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Analysis of Automated Segmentation of Stomach Contents in Longitudinal Magnetic Resonance Images using a 2D and 3D Deep Learning Approach
Author: Wolf, H. N. A., 25 Aug 2022Supervisor: Veta, M. (Supervisor 1), Pluim, J. P. W. (Supervisor 2), Schwab, H. (Supervisor 2), Smeets, P. A. M. (External person) (External coach), Camps, G. (External person) (External coach) & Witteman, B. (External person) (External coach)
Student thesis: Master
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Analyzing the relation between brain lesions and short association fibers using diffusion MRI
Author: Kamps, J. J. W., Jun 2017Supervisor: Sepasian, N. (Supervisor 1), Fuster, A. (Supervisor 2) & Pluim, J. P. W. (Supervisor 2)
Student thesis: Master
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Assessment of paired and unpaired learning to improve the image quality of onboard CBCT for radiotherapy of prostate cancer
Author: Kerckhaert, C. E. M., 31 Mar 2022Supervisor: Pluim, J. P. W. (Supervisor 1), van Eijnatten, M. (Supervisor 2), Tijssen, H. N. (External coach) & Markvoort, A. J. (Supervisor 2)
Student thesis: Master
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Automated B-Line Detection and Localization in Lung Ultrasound
Author: Lucassen, R. T., 25 Aug 2022Supervisor: Veta, M. (Supervisor 1), Pluim, J. P. W. (Supervisor 2) & Lopata, R. G. P. (Supervisor 2)
Student thesis: Master
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Automated Cardiac MR Scar Quantification with an Optimized Cascaded Pipeline and GAN-Based Data Augmentation
Author: Lustermans, D. R. P. R. M., 19 May 2022Supervisor: Breeuwer, M. (Supervisor 1), Scannell, C. (External coach) & Veta, M. (Supervisor 2)
Student thesis: Master
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Automated spinous process segmentation in X-ray images using convolutional neural networks
Author: Roodhorst, S., 17 Dec 2018Supervisor: Pluim, J. (Supervisor 1) & van Walsum, T. (External person) (External coach)
Student thesis: Master
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Automatic Cerebrovascular Segmentation of TOF-MRAs Using Deep Learning to Aid in Intracranial Aneurysm Detection
Author: de Vos, V., 14 Jun 2021Supervisor: Pluim, J. P. W. (Supervisor 1), Cheplygina, V. (Supervisor 2), Wu, M. (Supervisor 2), Kuijf, H. J. (External coach) & Timmins, K. M. (External person) (External coach)
Student thesis: Master
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Automatic myocardial scar segmentation and quantification in LGE CMR images
Author: Borleh, A., 27 Aug 2020Supervisor: Pluim, J. P. W. (Supervisor 1), Breeuwer, M. (Supervisor 2) & Hilbers, P. A. J. (Supervisor 2)
Student thesis: Master
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Autonomous Patient-Specific Magnetic Resonance Imaging Sequence Design via Real-Time Deep Reinforcement Learning
Author: Verschuren, S. H. A., 31 Oct 2022Supervisor: Raaijmakers, A. J. E. (Supervisor 1), Scannell, C. (Supervisor 2), Schwab, H. (Supervisor 2), van den Berg, C. A. T. (External person) (External coach) & Terpstra, M. (External person) (External coach)
Student thesis: Master
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Auto-segmentation of the Pituitary Adenoma and Normal Pituitary Tissue in Patients with Acromegaly
Author: Vromans, J., Oct 2022Supervisor: Breeuwer, M. (Supervisor 1), Klein, S. S. (External person) (External coach), Raaijmakers, A. J. E. (Supervisor 2) & Neggers, S. J. C. M. M. (External person) (External coach)
Student thesis: Master
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Benchmarking of Activity Inference Methods against Total Count Variation in Single-Cell RNA Sequencing and Incorporation in Trajectory Inference
Author: de Rooij, M., 2022Supervisor: Hilbers, P. A. J. (Supervisor 1), Eduati, F. (Supervisor 2), Finotello, F. (External person) (External coach), Raaijmakers, A. J. E. (Supervisor 2) & Pellegatta, S. (External person) (External coach)
Student thesis: Master
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Biomechanical model-based deformable image registration for CT-guided percutaneous liver tumor ablation interventions
Author: Cruts, J. M. H., 14 Jun 2021Supervisor: van de Vosse, F. N. (Supervisor 1), Pluim, J. P. W. (Supervisor 2), Baragona, M. (External person) (External coach), Isfort, P. (External person) (External coach) & van Walsum, T. (External person) (External coach)
Student thesis: Master
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Brain blood perfusion and white matter integrity in accelerated cognitive ageing patiens with epilepsy
Author: Stevens, J. C. J. M., 31 Oct 2019Supervisor: Breeuwer, M. (Supervisor 1), Pluim, J. (Supervisor 2), Aldenkamp, A. (Supervisor 2), Zinger, S. (Supervisor 2), Mestrom, R. (Supervisor 2) & Bernas, A. (Supervisor 2)
Student thesis: Master
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Canonical correlation analysis on microbial and metabolite data of individuals with metabolic syndrome
Author: van der Stam, J., 19 Jan 2019Supervisor: Hilbers, P. A. J. (Supervisor 1), van Riel, N. (Supervisor 2), Veta, M. (Supervisor 2), Levin, E. (External person) (External coach) & Nieuwdorp, M. (External person) (External coach)
Student thesis: Master
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Causal candidate genes identification for familial hypercholesterolemia family based on whole-genome sequencing
Author: Wang, Q., 31 Aug 2017Supervisor: Hilbers, P. A. J. (Supervisor 1), van Riel, N. A. W. (Supervisor 2), Hovingh, K. (External person) (External coach), Bosnacki, D. (Supervisor 2) & Veta, M. (Supervisor 2)
Student thesis: Master
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Challenges for Accelerated Partial Breast Irradiation on an MR-Linac: Electron streaming effect, synthetic CT for dose calculations and plan adaptation to daily MRI
Author: de Hond, Y. J. M., 19 Apr 2021Supervisor: Raaijmakers, A. J. E. (Supervisor 1), Hackett, S. L. (External person) (External coach), Houweling, A. C. (External person) (External coach), van Eijnatten, M. (Supervisor 2) & Lopata, R. G. P. (Supervisor 2)
Student thesis: Master
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Clustered tumor phenotypes and resectability prediction for PDA using radiomic feature analysis
Author: Janse, M. H. A., 27 Sept 2018Supervisor: de With, P. H. N. (Supervisor 1), Pluim, J. P. W. (Supervisor 2), Zinger, S. (Supervisor 2) & Hermans, J. J. (External person) (External coach)
Student thesis: Master
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Content based CT retrieval for pulmonary nodules: deep metric learning based feature extraction
Author: Aerts, T. G., 28 Feb 2019Supervisor: Menkovski, V. (Supervisor 1), Holenderski, M. (Supervisor 2) & Veta, M. (Supervisor 2)
Student thesis: Master
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Continuous arterial blood pressure estimations with the use of Photoplethysmography: A machine learning and arterial modelling approach
Author: van Waesberge, K., 11 Oct 2021Supervisor: van de Vosse, F. N. (Supervisor 1), Serrarens, A. (External coach), Veta, M. (Supervisor 2), Huberts, W. (Supervisor 2) & Wijntjes, P. (Supervisor 2)
Student thesis: Master
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Convolutional neural networks for detection of metastases in patients diagnosed with breast cancer
Author: Nijhof, T. G., 25 Jan 2018Supervisor: Pluim, J. (Supervisor 1)
Student thesis: Master
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Corneal endothelial cell segmentation and biomarker extraction in specular microscopy images using deep learning
Author: Timmers, D. F. M., 13 Sept 2021Supervisor: Veta, M. (Supervisor 1), van Eijnatten, M. (Supervisor 2) & Bosnacki, D. (Supervisor 2)
Student thesis: Master
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Counterfactual Inference on Retina Fundus Images using Deep Structural Causal Models
Author: Liao, S., 12 Dec 2022Supervisor: Menkovski, V. (Supervisor 1), Veta, M. (Supervisor 2) & Minartz, K. (Supervisor 2)
Student thesis: Master
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CycleGAN for coronay vessel segmentation
Author: van den Bosch, P. C. J., 29 Aug 2019Supervisor: Pluim, J. (Supervisor 1), Bovendeerd, P. (Supervisor 2), Veta, M. (Supervisor 2) & Oliván Bescós, J. (External person) (External coach)
Student thesis: Master
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Deep Gray Matter Segmentation in Multiple Sclerosis: a Deep Learning Approach
Author: Koopman, K., 13 Dec 2021Supervisor: Breeuwer, M. (Supervisor 1), Brouwer, I. (External person) (External coach) & Vrenken, H. (External person) (External coach)
Student thesis: Master
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Deep learning approaches for prostate cancer detection and grading in Bi-parametric MRI
Author: de Vente, C. W., 29 Aug 2019Supervisor: Veta, M. (Supervisor 1), Vos, P. (External person) (External coach), van Riel, N. (Supervisor 2) & Pluim, J. (Supervisor 2)
Student thesis: Master
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Deep learning-based analysis of bone marrow histopathology images
Author: van Eekelen, L., 19 Apr 2021Supervisor: Veta, M. (Supervisor 1), Pinckaers, H. (External person) (External coach), Hebeda, K. (External person) (External coach) & Litjens, G. J. S. (External coach)
Student thesis: Master
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Deep learning-based anatomy recognition for robot-assisted minimally invasive esophagectomy
Author: Jaspers, T. J. M., 31 Oct 2022Supervisor: van Eijnatten, M. (Supervisor 1), Ruurda, J. P. (External person) (External coach), Raaijmakers, A. J. E. (Supervisor 2), Bosnacki, D. (Supervisor 2), van der Sommen, F. (Supervisor 2), de Jongh, C. (External person) (External coach) & den Boer, R. B. (External person) (External coach)
Student thesis: Master
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Deep learning based classification of spitzoid lesions on H&E stained histopathology whole slide images
Author: van Kerkvoorde, J. A. J. P., 27 Aug 2020Supervisor: Veta, M. (Supervisor 1), van Eijnatten, M. (Supervisor 2), Bosnacki, D. (Supervisor 2), Blokx, W. A. M. (External person) (External coach) & Stathonikos, N. (External person) (External coach)
Student thesis: Master
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Deep Learning Based Deformable Image Registration of Abdominal CT scans during CT-Guided RF Ablation of Liver Tumours
Author: van den Berg, M. A., 25 Aug 2022Supervisor: van Eijnatten, M. (Supervisor 1), Raaijmakers, A. J. E. (Supervisor 2), Grisoni, F. (Supervisor 2), van Walsum, T. (External person) (External coach) & Moelker, A. (External person) (External coach)
Student thesis: Master
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Deep Learning-based Hyperspectral Imaging: an intraoperative margin assessment technique for improving breast cancer surgery
Author: de Kruif, N., 11 Oct 2021Supervisor: Pluim, J. P. W. (Supervisor 1), van Eijnatten, M. (Supervisor 2) & Bosnacki, D. (Supervisor 2)
Student thesis: Master
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Deep learning based image enhancement in limited-view ultrasound tomography
Author: van Pagee, L. J., 29 Sept 2022Supervisor: Schwab, H. (Supervisor 1), Awasthi, N. (Supervisor 2) & Brunsveld, L. (Supervisor 2)
Student thesis: Master
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Deep learning-based synthetic CT generation for brain MR-only radiotherapy: a multi-view approach on heterogeneous MRI of pediatric patients
Author: Bentvelzen, L. G., 27 Aug 2020Supervisor: Breeuwer, M. (Supervisor 1), Maspero, M. (External person) (External coach) & Philippens, M. E. P. (External person) (External coach)
Student thesis: Master
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Deep learning for the detection of cerebral microinfarcts in MR images
Author: Volmer, L. F., 31 Oct 2019Supervisor: Pluim, J. (Supervisor 1), Veta, M. (Supervisor 2) & van Riel, N. (Supervisor 2)
Student thesis: Master
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Deep Learning for Ultrasound Beamforming in the Radon Domain
Author: Jansen, G. E., 13 Sept 2021Supervisor: Lopata, R. G. P. (Supervisor 1), Schwab, H. (Supervisor 2), Awasthi, N. (Supervisor 2), van Eijnatten, M. (Supervisor 2) & van Sambeek, M. R. H. M. (Supervisor 2)
Student thesis: Master
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Deep Learning on Computed Tomography Scans to Predict Immunotherapy Response of Patients with Metastatic Melanoma
Author: de Mooij, R. A. J., 24 Nov 2022Supervisor: Veta, M. (Supervisor 1), Scannell, C. (Supervisor 2), Tel, J. (Supervisor 2) & ter Maat, R. (External coach)
Student thesis: Master
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Detection of Ductal Carcinoma in Situ in Whole-Slide Images Using Deep Learning
Author: Janssen, D. W. H., 13 Dec 2021Supervisor: Veta, M. (Supervisor 1), Breeuwer, M. (Supervisor 2) & Bosnacki, D. (Supervisor 2)
Student thesis: Master
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Developing a fluid-structure interaction model to study intraluminal thrombus in abdominal aorta aneurysms
Author: Fonken, J. H. C., 27 Aug 2020Supervisor: Lopata, R. G. P. (Supervisor 1), van de Vosse, F. N. (Supervisor 2), van Sambeek, M. R. H. M. (Supervisor 2), Raaijmakers, A. J. E. (Supervisor 2) & Nievergeld, A. H. M. (Supervisor 2)
Student thesis: Master
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Development and evaluation of radiation therapy dose distribution prediction models for breast cancer
Author: Bakx, N. L. M., 27 Aug 2020Supervisor: Pluim, J. P. W. (Supervisor 1), Hurkmans, C. (External coach), Bluemink, H. (External coach) & Hagelaar, E. (External person) (External coach)
Student thesis: Master
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Development of Image Registration Workflow for Matching of Adolescent to Child Anatomy
Author: Husić, A., 25 Aug 2022Supervisor: Breeuwer, M. (Supervisor 1), Zachiu, C. (External person) (External coach) & Seravalli, E. (External person) (External coach)
Student thesis: Master
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Diffusion tensor residuals as a potential biomarker for brain tissue damage
Author: van Rijn, A. P., 23 Apr 2020Supervisor: Pluim, J. P. W. (Supervisor 1), Leemans, A. L. G. (External person) (External coach) & de Luca, A. (External person) (External coach)
Student thesis: Master
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Dosimetric Evaluation of Central Lung SBRT on the MR-linac: a Case Series
Author: van den Dobbelsteen, M., 22 Feb 2021Supervisor: Raaijmakers, A. J. E. (Supervisor 1), van Eijnatten, M. (Supervisor 2), Foolen, J. (Supervisor 2), Hackett, S. L. (External person) (External coach) & Fast, M. F. (External person) (External coach)
Student thesis: Master
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Evaluation of the daily dose based on CBCT for locoregional breast cancer radiotherapy
Author: Broeckaert, F. V. A. M., 31 Oct 2022Supervisor: Raaijmakers, A. J. E. (Supervisor 1), Breeuwer, M. (Supervisor 2) & Lopata, R. G. P. (Supervisor 2)
Student thesis: Master
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Exploring Brain Connectivity in Ageing Using Explainable Deep Learning
Author: van Asch, T. G., 28 Feb 2022Supervisor: Breeuwer, M. (Supervisor 1), Jansen, J. F. A. (External coach) & de Jong, N. (External person) (External coach)
Student thesis: Master
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Effect of SNR and user-defined tractography parameters on group analyses of diffusion tensor metrics
Author: Vos, I. N., 27 Feb 2020Supervisor: Breeuwer, M. (Supervisor 1), Leemans, A. L. G. (External person) (External coach) & de Luca, A. (External person) (External coach)
Student thesis: Master
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Feasibility of MRI-guided Radiotherapy for Head-and-Neck Cancer on a 1.5T MR-Linac: MR-Linac treatment plan evaluation, robustness of MR-Linac planning and the electron return effect
Author: Massop, S., 19 Apr 2021Supervisor: Pluim, J. P. W. (Supervisor 1), Philippens, M. E. P. (External person) (External coach), Raaijmakers, A. J. E. (Supervisor 2) & van Rietbergen, B. (Supervisor 2)
Student thesis: Master