• Groene Loper, Building 15, Gemini-South 2.106, Secretary Rina van Dijck-Postma

    5612 AZ Eindhoven

    Netherlands

Research Output

2019

Convolutional neural networks for segmentation of the left atrium from gadolinium-enhancement MRI images

de Vente, C., Veta, M., Razeghi, O., Niederer, S., Pluim, J., Rhode, K. & Karim, R., 14 Feb 2019, Statistical Atlases and Computational Models of the Heart. Atrial Segmentation and LV Quantification Challenges - 9th International Workshop, STACOM 2018, Held in Conjunction with MICCAI 2018, Revised Selected Papers. McLeod, K., Mansi, T., Young, A., Rhode, K., Zhao, J., Li, S., Pop, M. & Sermesant, M. (eds.). Cham: Springer, p. 348-356 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11395 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

1 Citation (Scopus)
4 Downloads (Pure)

Correction: Automatic emphysema detection using weakly labeled HRCT lung images (PLoS ONE (2018) 13:10 (e0205397) DOI: 10.1371/journal.pone.0205397)

Pena, I. P., Cheplygina, V., Paschaloudi, S., Vuust, M., Carl, J., Weinreich, U. M., Ostergaard, L. R. & de Bruijne, M., 1 Aug 2019, In : PLoS ONE. 14, 8, 1 p., e0220873.

Research output: Contribution to journalComment/Letter to the editorAcademicpeer-review

Open Access
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9 Downloads (Pure)

Cross-scanner and cross-protocol harmonisation of multi-shell diffusion MRI data: open challenge and evaluation results

Ning, L., Bonet-Carne, E., Grussu, F., Sepehrband, F., Kaden, E., Veraart, J., Blumberg, S. B., Khoo, C. S., Palombo, M., Coll-Font, J., Scherrer, B., Warfield, S. K., Karayumak, S. C., Rathi, Y., Koppers, S., Weninger, L., Ebert, J., Merhof, D., Moyer, D., Pietsch, M. & 11 others, Christiaens, D., Teixeira, R., Tournier, J-D., Zhylka, A., Pluim, J., Parker, G., Rudrapatna, U., Evans, J., Charron, C., Jones, D. K. & Tax, C. W. M., 2019. 4 p.

Research output: Contribution to conferenceAbstractAcademic

Open Access

Deep learning-based prediction of kinetic parameters from myocardial perfusion MRI

Scannell, C. M., Bosch, P. V. D., Chiribiri, A., Lee, J., Breeuwer, M. & Veta, M., 27 Jul 2019, In : arXiv. 4 p., 1907.11899v1.

Research output: Contribution to journalArticleAcademic

Open Access
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10 Downloads (Pure)

Deep learning networks to segment and detect breast terminal duct lobular units, acini, and adipose tissue: a step toward the automated analysis of lobular involution as a marker for breast cancer risk

Onken, A., Wetstein, S., Pyle, M., Pluim, J., Schnitt, S., Baker, G., Collins, L., Tamimi, R., Veta, M. & Heng, Y., 2019, United States and Canadian Academy of Pathology (USCAP).

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademic

Deep learning with convolutional neural networks for histopathology image analysis

Bosnacki, D., van Riel, N. A. W. & Veta, M., 2019, Automated reasoning for systems biology and medicine. Lio, P. & Zuliani, P. (eds.). Springer, p. 453-469 (Computational Biology Series; vol. 30).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

1 Downloads (Pure)

Detection of acini in histopathology slides: towards automated prediction of breast cancer risk

Wetstein, S., Onken, A., Baker, G., Pyle, M., Pluim, J., Tamimi, R., Heng, Y. & Veta, M., 18 Mar 2019, Medical Imaging 2019: Digital Pathology. Tomaszewski, J. E. & Ward, A. D. (eds.). Bellingham, 7 p. 109560Q. (Proceedings of SPIE; vol. 10956).

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

1 Citation (Scopus)
6 Downloads (Pure)

Early phacoemulsification after acute angle closure in patients with coexisting cataract

Romkens, H. C. S., Beckers, H. J. M., Schouten, J. S. A. G., Nuijts, R. M. M. A., Berendschot, T. T. J. M., Breusegem, C. M. & Webers, C. A. B., 1 Feb 2019, In : Journal of Glaucoma. 28, 2, p. E34-E35

Research output: Contribution to journalLetterAcademicpeer-review

1 Citation (Scopus)

Epileptic seizure detection in EEG signals using sparse multiscale radial basis function networks and the Fisher vector approach

Li, Y., Cui, W. G., Huang, H., Guo, Y. Z., Li, K. & Tan, T., 15 Jan 2019, In : Knowledge-Based Systems. 164, p. 96-106 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

23 Citations (Scopus)

Examination of retinal vascular trajectory in schizophrenia and bipolar disorder

Appaji, A., Nagendra, B., Chako, D. M., Padmanabha, A., Jacob, A., Hiremath, C. V., Varambally, S., Kesavan, M., Venkatasubramanian, G., Rao, S. V., Webers, C. A. B., Berendschot, T. T. J. M. & Rao, N. P., 1 Dec 2019, In : Psychiatry and Clinical Neurosciences. 73, 12, p. 738-744 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

2 Citations (Scopus)

First generation versus second generation toric calculator for toric IOL implantations

Webers, V. S. C., Bauer, N. J. C., Visser, N., Berendschot, T. T. T. J. M., Saelens, I. E. Y., Beckers, H. J. M. & Nuijts, R. M. M. A., Mar 2019, In : Acta Ophthalmologica. 97, S262, p. 36-37 2 p.

Research output: Contribution to journalMeeting AbstractAcademic

1 Citation (Scopus)

Fourier transform on the homogeneous space of 3D positions and orientations for exact solutions to linear PDEs

Duits, R., Bekkers, E. J. & Mashtakov, A., 8 Jan 2019, In : Entropy. 21, 1, 38 p., 38.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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1 Citation (Scopus)
39 Downloads (Pure)

Habitual higher order aberrations affect Landolt but not Vernier acuity

Reiniger, J. L., Lobecke, A. C., Sabesan, R., Bach, M., Verbakel, F., de Brabander, J., Holz, F. G., Berendschot, T. T. J. M. & Harmening, W. M., 1 May 2019, In : Journal of Vision. 19, 5, p. 1-15 15 p., 11.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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2 Citations (Scopus)
31 Downloads (Pure)

Hierarchical Bayesian myocardial perfusion quantification

Scannell, C. M., Chiribiri, A., Villa, A. D. M., Breeuwer, M. & Lee, J., 6 Jun 2019, In : arXiv. 2019, 37 p., 1906.02540.

Research output: Contribution to journalArticleAcademic

Open Access
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29 Downloads (Pure)

Higher levels of daily physical activity are associated with better skin microvascular function in type 2 diabetes: The Maastricht Study

van der Heide, F. C. T., Houben, A. J. H., Sorensen, B. M., Kroon, A. A., van der Kallen, C. J. H., Henry, R. M. A., Eussen, S. J. P., Schaper, N. C., Savelberg, H. C. M., Berendschot, T. T. J., Koster, A., van Dongen, M. C. J., van der Berg, J. D., Schram, M. T. & Stehouwer, C. D. A., 1 Sep 2019, In : Diabetologia. 62, Suppl 1, p. S546-S546 1133.

Research output: Contribution to journalMeeting AbstractAcademic

Homogeneous B1+ for bilateral breast imaging at 7 T using a five dipole transmit array merged with a high density receive loop array

Krikken, E., Steensma, B. R., Voogt, I. J., Luijten, P. R., Klomp, D. W. J., Raaijmakers, A. J. E. & Wijnen, J. P., 1 Feb 2019, In : NMR in Biomedicine. 32, 2, 8 p., 4039.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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4 Citations (Scopus)
14 Downloads (Pure)

Increased high-density Lipoprotein levels associated with age-related macular degeneration: evidence from the EYE-RISK and European Eye Epidemiology Consortia

European Eye Epidemiology Consortium, EYE-RISK Consortium, Klaver, C. C. W. & Berendschot, T., 1 Mar 2019, In : Ophthalmology. 126, 3, p. 393-406 14 p.

Research output: Contribution to journalArticleAcademicpeer-review

17 Citations (Scopus)

In reply: early phacoemulsification after acute angle closure in patients with coexisting cataract

Romkens, H. C. S., Beckers, H. J. M., Schouten, J. S. A. G., Nuijts, R. M. M. A., Berendschot, T. T. J. M., Breusegem, C. M. & Webers, C. A. B., 1 Mar 2019, In : Journal of Glaucoma. 28, 3, p. E51

Research output: Contribution to journalLetterAcademicpeer-review

Intersubject specific absorption rate variability analysis through construction of 23 realistic body models for prostate imaging at 7T

Meliadò, E. F., van den Berg, C. A. T., Luijten, P. R. & Raaijmakers, A. J. E., Mar 2019, In : Magnetic Resonance in Medicine. 81, 3, p. 2106-2119 14 p.

Research output: Contribution to journalArticleAcademicpeer-review

5 Citations (Scopus)

In vitro and in vivo datasets of topically applied ketorolac tromethamine in aqueous humor using Raman spectroscopy

Zhang, S., Bertens, C. J. F., Erckens, R. J., van den Biggelaar, F. J. H. M., Berendschot, T. T. J. M., Webers, C. A. B., Nuijts, R. M. M. A. & Gijs, M., Dec 2019, In : Data in Brief. 27, 9 p., 104694.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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1 Citation (Scopus)
17 Downloads (Pure)

Learning domain-invariant representations of histological images

Lafarge, M. W., Pluim, J. P. W., Eppenhof, K. A. J. & Veta, M., 16 Jul 2019, In : Frontiers in Medicine. 6, 11 p., 162.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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28 Downloads (Pure)

Liver segmentation and metastases detection in MR images using convolutional neural networks

Jansen, M. J. A., Kuijf, H. J., Niekel, M., Veldhuis, W. B., Wessels, F. J., Viergever, M. A. & Pluim, J. P. W., 1 Oct 2019, In : Journal of Medical Imaging. 6, 4, 10 p., 044003.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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1 Citation (Scopus)
50 Downloads (Pure)

Local SAR assessment for multitransmit systems: a study on the peak local SAR value as a function of magnetic field strength

Raaijmakers, A. J. E. & Steensma, B. R., 2019, In : eMagRes. 8, 1, p. 1-10 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

2 Citations (Scopus)

Long-term changes in visual outcomes and ocular morphometrics after myopic and toric phakic intraocular lens implantation: five- and 10-year results

Jonker, S. M. R., Berendschot, T. T. J. M., Ronden, A. E., Saelens, I. E. Y., Bauer, N. J. C. & Nuijts, R. M. M. A., Oct 2019, In : Journal of Cataract and Refractive Surgery. 45, 10, p. 1470-1479 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Markers of microvascular dysfunction are associated with incident depressive symptoms: the Maastricht study

Geraets, A., van Agtmaal, M., Stehouwer, C. D. A., Sorensen, B., Berendschot, T., Schouten, J., Schaper, N., Henry, R., van der Kallen, C., Koster, A., Eussen, S., Kohler, S., Schram, M. T. & Houben, A. J. H. M., 2019, In : Journal of Vascular Research. 56, Suppl. 1, p. 38-39 2 p., 81.

Research output: Contribution to journalMeeting AbstractAcademic

Open Access

Markers of microvascular dysfunction are associated with prevalent and incident depressive symptoms: the Maastricht study

Houben, A., Geraets, A., van Agtmaal, M., Stehouwer, C. D. A., Sorensen, B., Berendschot, T. T. J. M., Webers, C. A. B., Schaper, N., Henry, R. M. A., van der Kallen, C. J. H., Koster, A., Eussen, S., van Sloten, T., Koehler, S. & Schram, M., Jul 2019, In : Journal of Hypertension. 37, 1 p., E72.

Research output: Contribution to journalMeeting AbstractAcademic

Open Access

Microvascular dysfunction is associated with worse cognitive performance: the Maastricht study

Rensma, S., van Sloten, T. T., Houben, A. J. H. M., van Boxtel, M. P. J., Berendschot, T. T. J. M., Jansen, J. F. A., Kroon, A. A., Koster, A., Backes, W. H., Schaper, N., Dinant, G. J., Schalkwijk, C. G., Henry, R. M. A., Wolfs, E. M. L., van Heumen, M. J. A., Schram, M. T. & Stehouwer, C. D. A., 2019, In : Journal of Vascular Research. 56, S1, p. 94 1 p., 203.

Research output: Contribution to journalMeeting AbstractAcademic

Open Access

Muti-shell diffusion MRI harmonisation and enhancement challenge (MUSHAC): progress and results

Ning, L., Bonet-Carne, E., Grussu, F., Sepehrband, F., Kaden, E., Veraart, J., Blumberg, S. B., Khoo, C. S., Palombo, M., Coll-Font, J., Scherrer, B., Warfield, S. K., Karayumak, S. C., Rathi, Y., Koppers, S., Weninger, L., Ebert, J., Merhof, D., Moyer, D., Pietsch, M. & 11 others, Christiaens, D., Teixeira, R., Tournier, J-D., Zhylka, A., Pluim, J., Parker, G., Rudrapatna, U., Evans, J., Charron, C., Jones, D. K. & Tax, C. W. M., 2019, Computational Diffusion MRI: International MICCAI Workshop, Granada, Spain, September 2018. Ning, L., Tax, C. M. W., Grussu, F., Bonet-Carne, E. & Sepehrband, F. (eds.). 226249 ed. Cham: Springer, p. 217-224 8 p. (Mathematics and Visualization).

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademic

Open Access
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4 Citations (Scopus)
74 Downloads (Pure)

Not-so-supervised: a survey of semi-supervised, multi-instance, and transfer learning in medical image analysis

Cheplygina, V., de Bruijne, M. & Pluim, J. P. W., May 2019, In : Medical Image Analysis. 54, p. 280-296 17 p.

Research output: Contribution to journalArticleAcademicpeer-review

39 Citations (Scopus)
3 Downloads (Pure)

On fiber orientation distribution peak selection for diffusion MRI fiber tractography

Zhylka, A., Leemans, A., Pluim, J. & De Luca, A., 1 Sep 2019, p. 14. 1 p.

Research output: Contribution to conferenceAbstractAcademic

Open Access
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31 Downloads (Pure)

Optimal input configuration of dynamic contrast enhanced MRI in convolutional neural networks for liver segmentation

Jansen, M. J. A., Kuijf, H. J. & Pluim, J. P. W., 2019, Medical Imaging 2019: Image Processing. Angelini, E. D., Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). Bellingham: SPIE, 8 p. 109491V. (Proceedings of SPIE; vol. 10949).

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

Open Access
File
1 Citation (Scopus)
4 Downloads (Pure)

Prediabetes and type 2 diabetes are associated with wider retinal arterioles and venules

Li, W., Schram, M. T., Berendschot, T., Webers, C., Kroon, A. A., van der Kallen, C., Henry, R., Koster, A., Dagnelie, P., Schaper, N., Huang, F., Dashtbozorg, B., Tan, T., Zhang, J., Sureshjani, S. A., Romeny, B. T. H., Stehouwer, C. D. A. & Houben, A. J. H. M., 2019, In : Journal of Vascular Research. 56, Suppl. 1, p. 73 1 p., 157.

Research output: Contribution to journalMeeting AbstractAcademic

Open Access

Predicting breast tumor proliferation from whole-slide images: The TUPAC16 challenge

Veta, M., Heng, Y. J., Stathonikos, N., Bejnordi, B. E., Beca, F., Wollmann, T., Rohr, K., Shah, M. A., Wang, D., Rousson, M., Hedlund, M., Tellez, D., Ciompi, F., Zerhouni, E., Lanyi, D., Viana, M., Kovalev, V., Liauchuk, V., Phoulady, H. A., Qaiser, T. & 13 others, Graham, S., Rajpoot, N., Sjöblom, E., Molin, J., Paeng, K., Hwang, S., Park, S., Jia, Z., Chang, E. I-C., Xu, Y., Beck, A. H., van Diest, P. J. & Pluim, J. P. W., May 2019, In : Medical Image Analysis. 54, p. 111-121 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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21 Citations (Scopus)
49 Downloads (Pure)

Preface

Bankhead, P., Janowczyk, A., Reyes-Aldasoro, C. C., Sirinukunwattana, K. & Veta, M., 1 Jan 2019, Digital Pathology. Reyes-Aldasoro, C. C., Veta, M., Janowczyk, A., Bankhead, P. & Sirinukunwattana, K. (eds.). Cham: Springer, p. v-vi 2 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11435).

Research output: Chapter in Book/Report/Conference proceedingForeword/postscriptAcademic

Open Access
3 Citations (Scopus)
101 Downloads (Pure)
3 Citations (Scopus)
101 Downloads (Pure)

Progressively growing convolutional networks for end-to-end deformable image registration

Eppenhof, K., Lafarge, M. & Pluim, J., 15 Mar 2019, Medical Imaging 2019 Image Processing. Landman, B. A. & Angelini, E. D. (eds.). Bellingham: SPIE, 7 p. 109491C. (Proceedings of SPIE; vol. 10949).

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

Open Access
File
3 Citations (Scopus)
101 Downloads (Pure)

Pulmonary CT registration through supervised learning with convolutional neural networks

Eppenhof, K. A. J. & Pluim, J. P. W., 2 May 2019, In : IEEE Transactions on Medical Imaging. 38, 5, p. 1097-1105 9 p., 8510836.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
14 Citations (Scopus)
110 Downloads (Pure)

Quality of vision after ultrathin descemet stripping automated endothelial keratoplasty: a multicentre randomized clinical trial

Dickman, M. M., Dunker, S. L., Kruit, P. J., Remeijer, L., van Rooij, J., van der Lelij, A., Wijdh, R. H. J., van den Biggelaar, F. J. H. M., Berendschot, T. T. J. M., van den Berg, T. J. T. P. & Nuijts, R. M. M. A., Jun 2019, In : Acta Ophthalmologica. 97, 4, p. E671-E672 2 p.

Research output: Contribution to journalLetterAcademicpeer-review

Reducing distortions in echo-planar breast imaging at ultrahigh field with high-resolution off-resonance maps

van Rijssel, M. J., Zijlstra, F., Seevinck, P. R., Luijten, P. R., Gilhuijs, K. G. A., Klomp, D. W. J. & Pluim, J. P. W., Jul 2019, In : Magnetic Resonance in Medicine. 82, 1, p. 425-435 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
3 Citations (Scopus)
36 Downloads (Pure)

Response: early phacoemulsification after acute angle closure in patients with coexisting cataract

Romkens, H. C. S., Beckers, H. J. M., Schouten, J. S. A. G., Nuijts, R. M. M. A., Berendschot, T. T. J. M., Breusegem, C. M. & Webers, C. A. B., 1 Jun 2019, In : Journal of Glaucoma. 28, 6, p. E108 1 p., e108.

Research output: Contribution to journalLetterAcademicpeer-review

Retinal microvascular biomarker extraction on fundus images from the Maastricht study using supervised deep learning

Heslinga, F., Pluim, J., Dasht Bozorg, B., Berendschot, T., Houben, A. J. H. M. & Veta, M., Apr 2019, In : Journal of Vascular Research. 56, suppl. 1, p. 120-120 1 p., 261.

Research output: Contribution to journalMeeting AbstractAcademic

Open Access
1 Downloads (Pure)

Retinal oximetry in normal and amblyopic children: a pilot study

Mohan, A., Kemmanu, V., Baliga, S., Patil, M., Madhavrao, B., Webers, C. A. B., Yadav, N. K., Shetty, R. & Berendschot, T. T. J. M., 1 Nov 2019, In : Acta Ophthalmologica. 97, 7, p. 684-687 4 p.

Research output: Contribution to journalArticleAcademicpeer-review

Retinal vascular abnormalities in schizophrenia and bipolar disorder: a window to the brain

Appaji, A., Nagendra, B., Chako, D. M., Padmanabha, A., Hiremath, C. V., Jacob, A., Varambally, S., Kesavan, M., Venkatasubramanian, G., Rao, S. V., Webers, C. A. B., Berendschot, T. T. J. M. & Rao, N. P., Nov 2019, In : Bipolar Disorders. 21, 7, p. 634-641 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

7 Citations (Scopus)

Retinal vascular fractal dimension in bipolar disorder and schizophrenia

Appaji, A., Nagendra, B., Chako, D. M., Padmanabha, A., Hiremath, C. V., Jacob, A., Varambally, S., Kesavan, M., Venkatasubramanian, G., Rao, S. V., Webers, C. A. B., Berendschot, T. T. J. M. & Rao, N. P., 1 Dec 2019, In : Journal of Affective Disorders. 259, p. 98-103 6 p.

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Retinal vascular tortuosity in schizophrenia and bipolar disorder

Appaji, A., Nagendra, B., Chako, D. M., Padmanabha, A., Jacob, A., Hiremath, C. V., Varambally, S., Kesavan, M., Venkatasubramanian, G., Rao, S. V., Webers, C. A. B., Berendschot, T. T. J. M. & Rao, N. P., 1 Oct 2019, In : Schizophrenia Research. 212, p. 26-32 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

3 Citations (Scopus)

Risk factors for explantation of iris-fixated phakic intraocular lenses

Jonker, S. M. R., Van Averbeke, A. A. C., Berendschot, T. T. J. M., Saelens, I. E. Y. & Nuijts, R. M. M. A., Aug 2019, In : Journal of Cataract and Refractive Surgery. 45, 8, p. 1092-1098 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Robust non-rigid motion compensation of free-breathing myocardial perfusion MRI data

Scannell, C. M., Villa, A. D. M., Lee, J., Breeuwer, M. & Chiribiri, A., 1 Aug 2019, In : IEEE Transactions on Medical Imaging. 38, 8, p. 1812-1820 9 p., 8632981.

Research output: Contribution to journalArticleAcademicpeer-review

7 Citations (Scopus)

Serum phosphate and microvascular function in a population-based cohort

Ginsberg, C., Houben, A. J. H. M., Malhotra, R., Berendschot, T. T. J. M., Dagnelie, P. C., Kooman, J. P., Webers, C. A., Stehouwer, C. D. A. & Ix, J. H., 7 Nov 2019, In : Clinical Journal of the American Society of Nephrology. 14, 11, p. 1626-1633 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

5 Citations (Scopus)