• Groene Loper, Building 15, Gemini-South 2.106, Secretary Rina van Dijck-Postma

    5612 AZ Eindhoven

    Netherlands

Research Output

Abstract

Cross-scanner and cross-protocol harmonisation of multi-shell diffusion MRI data: open challenge and evaluation results

Ning, L., Bonet-Carne, E., Grussu, F., Sepehrband, F., Kaden, E., Veraart, J., Blumberg, S. B., Khoo, C. S., Palombo, M., Coll-Font, J., Scherrer, B., Warfield, S. K., Karayumak, S. C., Rathi, Y., Koppers, S., Weninger, L., Ebert, J., Merhof, D., Moyer, D., Pietsch, M. & 11 others, Christiaens, D., Teixeira, R., Tournier, J-D., Zhylka, A., Pluim, J., Parker, G., Rudrapatna, U., Evans, J., Charron, C., Jones, D. K. & Tax, C. W. M., 2019. 4 p.

Research output: Contribution to conferenceAbstractAcademic

Open Access

Fast contour propagation for MR-guided prostate radiotherapy using CNNs

Eppenhof, K. A. J., Maspero, M., Savenije, M. H. F., de Boer, J. C. J., van der Voort van Zyp, J. R. N., Raaymakers, B. W., Raaijmakers, A., Veta, M., Pluim, J. P. W. & van den Berg, C. A. T., 15 Jan 2020, (Accepted/In press).

Research output: Contribution to conferenceAbstractAcademic

Geometric connectivity analysis based on edge co-occurrences in retinal images

Abbasi-Sureshjani, S., Zhang, J., Sanguinetti, G. R., Duits, R. & ter Haar Romenij, B. M., Oct 2016, p. 154–155. 2 p.

Research output: Contribution to conferenceAbstractAcademic

Open Access
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Identification of growth seeds in preterm brain using Helmholtz decomposition: a longitudinal study

Pepe, A., Auzias, G., Dubois, J., Leroy, F., Claessens, N. H. P., Moeskops, P., Mangin, J-F., Išgum, I., Benders, M. J. N. L. & Lefevre, J., 2016.

Research output: Contribution to conferenceAbstractAcademic

Mapping cortical development from morphology to microstructure: a longitudinal study in preterms

Zomeno, M., Lefevre, J., Leroy, F., Germanaud, D., Kersbergen, K. J., Moeskops, P., Claessens, N. H. P., Poupon, C., Išgum, I., Mangin, J-F., Benders, M. J. N. L., Dubois, J. & Lebenberg, J., 2016, p. 4226. 6 p.

Research output: Contribution to conferenceAbstractAcademic

Open Access
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On fiber orientation distribution peak selection for diffusion MRI fiber tractography

Zhylka, A., Leemans, A., Pluim, J. & De Luca, A., 1 Sep 2019, p. 14. 1 p.

Research output: Contribution to conferenceAbstractAcademic

Open Access
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31 Downloads (Pure)

RetinaCheck : an interactive platform for retinal image analysis

Dashtbozorg, B., Zhang, J., Huang, F. & ter Haar Romenij, B. M., 2016.

Research output: Contribution to conferenceAbstractAcademic

3 Downloads (Pure)

The volumetric bull's eye plot

Termeer, M. A., Bescos, J. O., Breeuwer, M., Vilanova, A., Gerritsen, F. A. & Groeller, M. E., 2008. 3 p.

Research output: Contribution to conferenceAbstractAcademic

Training deep convolutional neural networks for deformable image registration of pulmonary CT images

Eppenhof, K., Lafarge, M. & Pluim, J., 28 Jun 2018.

Research output: Contribution to conferenceAbstractAcademic

2 Downloads (Pure)
Article

3D deformable registration of longitudinal abdominopelvic CT images using unsupervised deep learning

Eijnatten, M. V., Rundo, L., Batenburg, K. J., Lucka, F., Beddowes, E., Caldas, C., Gallagher, F. A., Sala, E., Schönlieb, C-B. & Woitek, R., 15 May 2020, (Accepted/In press) In : Computer Methods and Programs in Biomedicine.

Research output: Contribution to journalArticleAcademic

1 Downloads (Pure)

3D winding number: theory and application to medical imaging

Becciu, A., Fuster, A., Pottek, M., van den Heuvel, B. J. P., Haar Romenij, ter, B. M. & Assen, van, H. C., 2011, In : International Journal of Biomedical Imaging. 2011, p. 516942-1/13 13 p., 516942.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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1 Citation (Scopus)
311 Downloads (Pure)

4D MRI flow coupled to physics-based fluid simulation for blood-flow visualization

de Hoon, N. H. L. C., Pelt, van, R. F. P., Jalba, A. C. & Vilanova, A., 2014, In : Computer Graphics Forum. 33, 3, p. 121-130 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

7 Citations (Scopus)
5 Downloads (Pure)

4D semantic cardiac magnetic resonance image synthesis on XCAT anatomical model

Abbasi-Sureshjani, S., Amirrajab, S., Lorenz, C., Weese, J., Pluim, J. & Breeuwer, M., 17 Feb 2020, In : arXiv.org, e-Print Archive, Physics. 13 p., 2002.07089.

Research output: Contribution to journalArticleAcademic

Open Access
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62. The virtual surgical pelvis: a highly-detailed 3D pelvic model for anatomical education and surgical simulation

Kraima, A. C., Smit, N. N., Jansma, D., West, N. P., Quirke, P., Rutten, H. J., Vilanova, A., Velde, C. J. H. V. D. & DeRuiter, M. C., 1 Nov 2014, In : European Journal of Surgical Oncology. 40, 11, p. S32 1 p.

Research output: Contribution to journalArticleAcademic

7T fMRI reveals feasibility of covert visual attention-based brain-computer interfacing with signals obtained solely from cortical grey matter accessible by subdural surface electrodes

Andersson, J. P., Ramsey, N. F., Viergever, M. A. & Pluim, J. P. W., 2013, In : Clinical Neurophysiology. 124, 11, p. 2191-2197 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

5 Citations (Scopus)
2 Downloads (Pure)

A 16-channel combined loop-dipole transceiver array for 7 Tesla body MRI

Ertürk, M. A., Raaijmakers, A. J. E., Adriany, G., Uğurbil, K. & Metzger, G. J., 1 Feb 2017, In : Magnetic Resonance in Medicine. 77, 2, p. 884-894 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
61 Citations (Scopus)

A 3D active shape model driven by fuzzy inference : application to cardiac CT and MR

Assen, van, H. C., Danilouchkine, M. G., Dirksen, M. S., Reiber, J. H. C. & Lelieveldt, B. P. F., 2008, In : IEEE Transactions on Information Technology in Biomedicine. 12, 5, p. 595-605 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

65 Citations (Scopus)

Accelerated high-frame-rate mouse heart cine-MRI using compressed sensing reconstruction

Mohamed, A. G. A., Coolen, B. F., Abdurrachim, D., Pires da Silva Castro, R. M., Florack, L. M. J., Prompers, J. J., Nicolaij, K. & Strijkers, G. J., 2013, In : NMR in Biomedicine. 26, 4, p. 451-457

Research output: Contribution to journalArticleAcademicpeer-review

15 Citations (Scopus)

Accelerating implant RF safety assessment using a low-rank inverse update method

Stijnman, P. R. S., Tokaya, J. P., van Gemert, J., Luijten, P. R., Pluim, J. P. W., Brink, W. M., Remis, R. F., van den Berg, C. A. T. & Raaijmakers, A. J. E., 1 May 2020, In : Magnetic Resonance in Medicine. 83, 5, p. 1796-1809 14 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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Accuracy and precision of vessel area assessment : manual versus automatic lumen delineation based on full-width at half-maximum

Merkx, M. A. G., Bescós, J. O., Geerts, L., Bosboom, E. M. H., Vosse, van de, F. N. & Breeuwer, M., 2012, In : Journal of Magnetic Resonance Imaging. 36, 5, p. 1186-1193 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

18 Citations (Scopus)
4 Downloads (Pure)

Accurate computer-aided quantification of left ventricular parameters : experience in 1555 cardiac magnetic resonance studies from the Framingham Heart Study

Hautvast, G. L. T. F., Salton, C. J., Chuang, M. L., Breeuwer, M., O'Donnel, C. J. & Manning, W. J., 2011, In : Magnetic Resonance in Medicine. 67, 5, p. 1478-1486 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

13 Citations (Scopus)

Accurate object localization in gray level images using the center of gravity measure: accuracy versus precision

Assen, van, H. C., Egmont-Petersen, M. & Reiber, J. H. C., 2002, In : IEEE Transactions on Image Processing. 11, 12, p. 1379-1384

Research output: Contribution to journalArticleAcademicpeer-review

78 Citations (Scopus)
1 Downloads (Pure)

A comparative analysis of the collagen architecture in the carotid artery : second harmonic generation versus diffusion tensor imaging

Ghazanfari, S., Driessen - Mol, A., Strijkers, G. J., Kanters, F. M. W., Baaijens, F. P. T. & Bouten, C. V. C., 2012, In : Biochemical and Biophysical Research Communications. 426, 1, p. 54-58

Research output: Contribution to journalArticleAcademicpeer-review

25 Citations (Scopus)

A computational method for segmenting topological pointsets and application to image analysis

Kalitzin, S., Staal, J. J., Haar Romenij, ter, B. M. & Viergever, M. A., 2001, In : IEEE Transactions on Pattern Analysis and Machine Intelligence. 23, 5, p. 447-459

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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25 Citations (Scopus)
104 Downloads (Pure)

A computer-simulation study on the effects of MRI voxel dimensions on carotid plaque lipid-core and fibrous cap segmentation and stress modeling

Nieuwstadt, H. A., Kassar, Z. A. M., van der Lugt, A., Breeuwer, M., van der Steen, A. F. W., Wentzel, J. J. & Gijsen, F. J. H., 9 Apr 2015, In : PLoS ONE. 10, 4, p. 1-15 e0123031.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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2 Citations (Scopus)
91 Downloads (Pure)

Active shape model segmentation with optimal features

Ginneken, van, B., Frangi, A. F., Staal, J. J., Haar Romenij, ter, B. M. & Viergever, M. A., 2002, In : IEEE Transactions on Medical Imaging. 21, 8, p. 924-933

Research output: Contribution to journalArticleAcademicpeer-review

418 Citations (Scopus)

Adaptive local multi-atlas segmentation : application to the heart and the caudate nucleus

Rikxoort, van, E. M., Išgum, I., Arzhaeva, Y., Staring, M., Klein, S., Viergever, M. A., Pluim, J. P. W. & Ginneken, van, B., 2010, In : Medical Image Analysis. 14, 1, p. 39-49

Research output: Contribution to journalArticleAcademicpeer-review

127 Citations (Scopus)

Adaptive optics imaging of the outer retinal tubules in Bietti's crystalline dystrophy

Battu, R., Akkali, M. C., Bhanushali, D., Srinivasan, P., Shetty, R., Berendschot, T. T. J. M., Schouten, J. S. A. G. & Webers, C. A. B., May 2016, In : Eye. 30, 5, p. 705-712

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)

Adaptive stochastic gradient descent optimisation for image registration

Klein, S., Pluim, J. P. W., Staring, M. & Viergever, M. A., 2009, In : International Journal of Computer Vision. 81, 3, p. 227-239 13 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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264 Citations (Scopus)
231 Downloads (Pure)

A deep learning method for image-based subject-specific local SAR assessment

Meliadò, E. F., Raaijmakers, A. J. E., Sbrizzi, A., Steensma, B. R., Maspero, M., Savenije, M. H. F., Luijten, P. R. & van den Berg, C. A. T., 1 Feb 2020, In : Magnetic Resonance in Medicine. 83, 2, p. 695-711 17 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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4 Citations (Scopus)
21 Downloads (Pure)

Adjugate diffusion tensors for geodesic tractography in white matter

Fuster, A., Dela Haije, T. C. J., Tristán-Vega, A., Plantinga, B. R., Westin, C-F. & Florack, L. M. J., 1 Jan 2016, In : Journal of Mathematical Imaging and Vision. 54, 1, p. 1-14 14 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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11 Citations (Scopus)
232 Downloads (Pure)

Advanced Visibility Enhancement for Stents and Other Devices: Image Processing Aspects

Schoonenberg, G. A. F. & Florent, R., 2009, In : Cardiology Clinics. 27, 3, p. 477-490

Research output: Contribution to journalArticleAcademicpeer-review

3 Citations (Scopus)

Adversarial Attack Vulnerability of Medical Image Analysis Systems: Unexplored Factors

Wetstein, S. C., González-Gonzalo, C., Bortsova, G., Liefers, B., Dubost, F., Katramados, I., Hogeweg, L., Ginneken, B. V., Pluim, J. P. W., Bruijne, M. D., Sánchez, C. I. & Veta, M., 11 Jun 2020, In : arXiv.

Research output: Contribution to journalArticleAcademic

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A dynamic scale-space paradigm

Salden, A. H., Haar Romenij, ter, B. M. & Viergever, M. A., 2001, In : Journal of Mathematical Imaging and Vision. 15, 3, p. 127-168

Research output: Contribution to journalArticleAcademicpeer-review

8 Citations (Scopus)

A fluoroscopy-based planning and guidance software tool for minimally invasive hip refixation by cement injection

Malan, D. F., van der Walt, S. J., Raidou, R. G., van den Berg, B., Stoel, B. C., Botha, C. P., Nelissen, R. G. H. H. & Valstar, E. R., 1 Feb 2016, In : International Journal of Computer Assisted Radiology and Surgery. 11, 2, p. 281-296 16 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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3 Citations (Scopus)
195 Downloads (Pure)
Open Access
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26 Downloads (Pure)

A general framework for geometry-driven evolution equations

Niessen, W. J., Haar Romenij, ter, B. M., Florack, L. M. J. & Viergever, M. A., 1997, In : International Journal of Computer Vision. 21, 3, p. 187-205

Research output: Contribution to journalArticleAcademicpeer-review

16 Citations (Scopus)
1 Downloads (Pure)

A generic approach to diffusion filtering of matrix-fields

Burgeth, B., Didas, S., Florack, L. M. J. & Weickert, J., 2007, In : Computing. 81, 2-3, p. 179-197

Research output: Contribution to journalArticleAcademicpeer-review

22 Citations (Scopus)
3 Downloads (Pure)

A linear image reconstruction framework based on Sobolev type inner products

Janssen, B. J., Kanters, F. M. W., Duits, R., Florack, L. M. J. & Haar Romenij, ter, B. M., 2006, In : International Journal of Computer Vision. 70, 3, p. 231-240

Research output: Contribution to journalArticleAcademicpeer-review

12 Citations (Scopus)
2 Downloads (Pure)

A method for the quantification of the pressure dependent 3D collagen configuration in the arterial adventitia

Schrauwen, J. T. C., Vilanova, A., Rezakhaniha, R., Stergiopulos, N., Vosse, van de, F. N. & Bovendeerd, P. H. M., 2012, In : Journal of Structural Biology. 180, 2, p. 335-342

Research output: Contribution to journalArticleAcademicpeer-review

36 Citations (Scopus)

A model of heart rate changes to detect seizures in severe epilepsy

Elmpt, van, W. J. C., Nijsen, T. M. E., Griep, P. A. M. & Arends, J. B. A. M., 2006, In : Seizure. 15, 6, p. 366-375 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

73 Citations (Scopus)
1 Downloads (Pure)

A multi-orientation analysis approach to retinal vessel tracking

Bekkers, E. J., Duits, R., Berendschot, T. T. J. M. & Haar Romeny, ter, B. M., 2014, In : Journal of Mathematical Imaging and Vision. 49, 3, p. 583-610

Research output: Contribution to journalArticleAcademicpeer-review

63 Citations (Scopus)
5 Downloads (Pure)

An 8-channel Tx/Rx dipole array combined with 16 Rx loops for high-resolution functional cardiac imaging at 7 T

Steensma, B. R., Voogt, I. J., Leiner, T., Luijten, P. R., Habets, J., Klomp, D. W. J., van den Berg, C. A. T. & Raaijmakers, A. J. E., 1 Feb 2018, In : Magnetic Resonance Materials in Physics, Biology and Medicine (MAGMA). 31, 1, p. 7-18 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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15 Citations (Scopus)
29 Downloads (Pure)

An Adaptive Tissue Characterisation Network for Model-Free Visualisation of Dynamic Contrast-Enhanced Magnetic Resonance Image Data

Twellmann, T., Lichte, O. & Nattkemper, T. W., 2005, In : IEEE Transactions on Medical Imaging. 24, 10, p. 1256-1266

Research output: Contribution to journalArticleAcademicpeer-review

66 Citations (Scopus)

Analysis of cerebral infarction pattern in computed tomography images of patients with internal carotid artery stenosis

Jongen, C., Nederkoorn, P. J., Niessen, W. J. & Pluim, J. P. W., 2004, In : Investigative Radiology. 39, 8, p. 462-469 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

Analysis of vessel connectivities in retinal images by cortically inspired spectral clustering

Favali, M., Abbasi-Sureshjani, S., ter Haar Romenij, B. M. & Sarti, A., 1 Sep 2016, In : Journal of Mathematical Imaging and Vision. 56, 1, p. 158-172 15 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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14 Citations (Scopus)
117 Downloads (Pure)

An automatic graph-based approach for artery/vein classification in retinal images

Dashtbozorg, B., Mendonca, A. M. & Campilho, A., 1 Mar 2014, In : IEEE Transactions on Image Processing. 23, 3, p. 1073-1083

Research output: Contribution to journalArticleAcademicpeer-review

98 Citations (Scopus)

A new methodology for multiscale myocardial deformation and strain analysis based on tagging MRI

Florack, L. M. J. & Assen, van, H. C., 2010, In : International Journal of Biomedical Imaging. 2010, p. 341242-1/8 8 p., 341242.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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11 Citations (Scopus)
72 Downloads (Pure)

A new modified histogram matching normalization for time series microarray analysis

Astola, L. J. & Molenaar, J., 2014, In : Microarrays. 3, 3, p. 203-211 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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A new tensorial framework for single-shell high angular resolution diffusion imaging

Florack, L. M. J., Balmachnova, E., Astola, L. J. & Brunenberg, E. J. L., 2010, In : Journal of Mathematical Imaging and Vision. 38, 3, p. 171-181

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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9 Citations (Scopus)
79 Downloads (Pure)