• Groene Loper, Building 15, Gemini-South 2.106, Secretary Rina van Dijck-Postma

    5612 AZ Eindhoven

    Netherlands

Research Output 1977 2019

2019

Approximation of a pipeline of unsupervised retina image analysis methods with a CNN

Heslinga, F., Pluim, J., Dasht Bozorg, B., Berendschot, T., Houben, B., Henry, R. M. A. & Veta, M., Feb 2019, (Accepted/In press) Image Processing. Bellingham: SPIE, 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

Biomarkers
Image analysis
Pipelines
Neural networks
Chemical activation

A survey of crowdsourcing in medical image analysis

Ørting, S., Doyle, A., Hirth, M., van Hilten, A., Inel, O., Madan, C. R., Mavridis, P., Spiers, H. & Cheplygina, V., 25 Feb 2019, In : arXiv. 12 p., 1902.09159

Research output: Contribution to journalArticleAcademic

Open Access
File
Image analysis
Astrophysics
Medical imaging
Metadata
Learning algorithms

Benchmark on automatic 6-month-old infant brain segmentation algorithms: The iSeg-2017 Challenge

Wang, L., Nie, D., Li, G., Puybareau, E., Dolz, J., Zhang, Q., Wang, F., Xia, J., Wu, Z., Chen, J., Thung, K-H., Bui, T. D., Shin, J., Zeng, G., Zheng, G., Fonov, V. S., Doyle, A., Xu, Y., Moeskops, P., Pluim, J. P. W. & 9 othersDesrosiers, C., Ayed, I. B., Sanroma, G., Benkarim, O. M., Casamitjana, A., Vilaplana, V., Lin, W., Li, G. & Shen, D., 27 Feb 2019, In : IEEE Transactions on Medical Imaging.

Research output: Contribution to journalArticleAcademicpeer-review

Benchmarking
Brain
Magnetic resonance
Magnetic Resonance Spectroscopy
Cerebrospinal fluid
2 Citations (Scopus)

Epileptic seizure detection in EEG signals using sparse multiscale radial basis function networks and the Fisher vector approach

Li, Y., Cui, W. G., Huang, H., Guo, Y. Z., Li, K. & Tan, T., 15 Jan 2019, In : Knowledge-Based Systems. 164, p. 96-106

Research output: Contribution to journalArticleAcademicpeer-review

Radial basis function networks
Electroencephalography
Statistical tests
Model structures
Particle swarm optimization (PSO)

Fourier transform on the homogeneous space of 3D positions and orientations for exact solutions to linear PDEs

Duits, R., Bekkers, E. J. & Mashtakov, A., 8 Jan 2019, In : Entropy. 21, 1, 38 p., 38

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
pulse detonation engines
quotients
rigid structures
robotics
image analysis

Predicting breast tumor proliferation from whole-slide images: The TUPAC16 challenge

Veta, M., Heng, Y. J., Stathonikos, N., Bejnordi, B. E., Beca, F., Wollmann, T., Rohr, K., Shah, M. A., Wang, D., Rousson, M., Hedlund, M., Tellez, D., Ciompi, F., Zerhouni, E., Lanyi, D., Viana, M., Kovalev, V., Liauchuk, V., Phoulady, H. A., Qaiser, T. & 13 othersGraham, S., Rajpoot, N., Sjöblom, E., Molin, J., Paeng, K., Hwang, S., Park, S., Jia, Z., Chang, E. I-C., Xu, Y., Beck, A. H., van Diest, P. J. & Pluim, J. P. W., 27 Feb 2019, In : Medical Image Analysis. 54, p. 111-121 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Tumors
Breast Neoplasms
Neoplasms
Mitosis
Image analysis

Reducing distortions in echo-planar breast imaging at ultrahigh field with high-resolution off-resonance maps

van Rijssel, M. J., Zijlstra, F., Seevinck, P. R., Luijten, P. R., Gilhuijs, K. G. A., Klomp, D. W. J. & Pluim, J. P. W., 1 Mar 2019, In : Magnetic Resonance in Medicine.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Echo-Planar Imaging
Breast
Nonparametric Statistics
Artifacts
Healthy Volunteers

Robust non-rigid motion compensation of free-breathing myocardial perfusion MRI data

Scannell, C. M., Villa, A. D. M., Lee, J., Breeuwer, M. & Chiribiri, A., 1 Feb 2019, In : IEEE Transactions on Medical Imaging.

Research output: Contribution to journalArticleAcademicpeer-review

Motion compensation
Magnetic Resonance Angiography
Magnetic resonance
Compensation and Redress
Respiration

The dual-mode dipole: A new array element for 7T body imaging with reduced SAR

Solomakha, G., Leeuwen, C. V., Raaijmakers, A., Simovski, C., Popugaev, A., Abdeddaim, R., Melchakova, I. & Glybovski, S., 1 Feb 2019, In : Magnetic Resonance in Medicine. 81, 2, p. 1459-1469

Research output: Contribution to journalArticleAcademicpeer-review

Prostate
Volunteers
2018
Open Access
Biomarkers
Blood Vessels
Retina
Retinal Vessels
Pipelines
4 Citations (Scopus)

An 8-channel Tx/Rx dipole array combined with 16 Rx loops for high-resolution functional cardiac imaging at 7 T

Steensma, B. R., Voogt, I. J., Leiner, T., Luijten, P. R., Habets, J., Klomp, D. W. J., van den Berg, C. A. T. & Raaijmakers, A. J. E., 1 Feb 2018, In : Magnetic Resonance Materials in Physics, Biology and Medicine. 31, 1, p. 7-18 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Signal-To-Noise Ratio
Electromagnetic Phenomena
Healthy Volunteers

Analysis of retinal vascular biomarkers for early detection of diabetes

Zhang, J., Dashtbozorg, B., Huang, F., Berendschot, T. T. J. M. & ter Haar Romeny, B. M., 1 Jan 2018, ViPIMAGE 2017: Proceedings of the VI ECCOMAS Thematic Conference on Computational Vision and Medical Image Processing Porto, Portugal, October 18-20, 2017. Tavares, J. M. R. S. & Natal Jorge, R. M. (eds.). Cham: Springer, p. 811-817 7 p. (Lecture Notes in Computational Vision and Biomechanics; vol. 27)

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

Biomarkers
Medical problems
Fractal dimension
Statistical methods
Computer aided diagnosis

Analysis of vascular biomarkers on retinal images for early eye disease detection

Huang, F., 12 Sep 2018, Eindhoven: Technische Universiteit Eindhoven. 219 p.

Research output: ThesisPhd Thesis 1 (Research TU/e / Graduation TU/e)Academic

Open Access
File

An improved U-net architecture for simultaneous arteriole and venule segmentation in fundus image

Xu, X., Tan, T. & Xu, F., 21 Aug 2018, Medical Image Understanding and Analysis - 22nd Conference, Proceedings. Nixon, M., Mahmoodi, S. & Zwiggelaar, R. (eds.). Cham: Springer, p. 333-340 8 p. (Communications in Computer and Information Science; vol. 894)

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

Segmentation
Vessel
Misclassification Rate
Error Propagation
Labels
4 Citations (Scopus)

Artery/vein classification using reflection features in retina fundus images

Huang, F., Dasht Bozorg, B. & ter Haar Romeny, B. M., 1 Jan 2018, In : Machine Vision and Applications. 29, 1, p. 23-34 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Biomarkers
Image analysis
Classifiers
Pixels
Association reactions

Automatic classification of focal liver lesions based on clinical DCE-MR and T2-weighted images: a feasibility study

Jansen, M. J. A., Kuijf, H. J. & Pluim, J. P. W., 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. Piscataway: Institute of Electrical and Electronics Engineers (IEEE), p. 245-248 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

Automatic emphysema detection using weakly labeled HRCT lung images

Pena, I. P., Cheplygina, V., Paschaloudi, S., Vuust, M., Carl, J., Weinreich, U. M., Ostergaard, L. R. & de Bruijne, M., 15 Oct 2018, In : PLoS ONE. 13, 10, 17 p., e0205397

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File

Burden of disease of people with epilepsy during an optimized diagnostic trajectory: costs and quality of life

Wijnen, B. F. M., Schat, S. L., de Kinderen, R. J. A., Colon, A. J., Ossenblok, P. P. W. & Evers, S. M. A. A., 1 Oct 2018, In : Epilepsy Research. 146, p. 87-93 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

Epilepsy
Quality of Life
Costs and Cost Analysis
Delivery of Health Care
Health Care Costs

Cataract surgery in eyes with a pre-existent posterior capsule rupture after intravitreal anti-VEGF injections

Spekreijse, L. S., Berendschot, T. T. J. M., Beckers, H. J. M., Visser, N., Saelens, I. E. Y., de Crom, R. M. P. C., Webers, C. A. B. & Nuijts, R. M. M. A., Mar 2018, In : Acta Ophthalmologica. 96, p. 32-32

Research output: Contribution to journalMeeting AbstractAcademic

Open Access
File
1 Citations (Scopus)

Changes in brain morphology and microstructure in relation to early brain activity in extremely preterm infants

Tataranno, M. L., Claessens, N. H. P., Moeskops, P., Toet, M. C., Kersbergen, K. J., Buonocore, G., Išgum, I., Leemans, A., Counsell, S. J., Groenendaal, F., de Vries, L. S. & Benders, M. J. N. L., 17 Jan 2018, In : Pediatric Research. 83, p. 834-842

Research output: Contribution to journalArticleAcademicpeer-review

Extremely Premature Infants
Brain
Corpus Callosum
Anisotropy
Growth

Characteristics of the retinal microvasculature in association with cardiovascular risk markers in children with overweight, obesity and morbid obesity

Rijks, J., Vreugdenhil, A., Dorenbos, E., Karnebeek, K., Joris, P., Berendschot, T., Mensink, R. & Plat, J., 16 Nov 2018, In : Scientific Reports. 8, 8 p., 16952

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File

Classification of breast mass in 3D ultrasound images with annotations based on convolutional neural networks

Kong, X., Tan, T., Bao, L. & Wang, G., 20 Aug 2018, In : Chinese Journal of Biomedical Engineering. 37, 4, p. 414-422 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Breast
Ultrasonics
Neural networks
Information fusion
Area Under Curve
3 Citations (Scopus)

Comparability of subjective and objective measurements of nuclear density in cataract patients

Makhotkina, N. Y., Berendschot, T. T. J. M., van den Biggelaar, F. J. H. M., Weik, A. R. H. & Nuijts, R. M. M. A., Jun 2018, In : Acta Ophthalmologica. 96, 4, p. 356-363

Research output: Contribution to journalArticleAcademicpeer-review

Comparing signal-to-noise ratio for prostate imaging at 7T and 3T

Steensma, B. R., Luttje, M., Voogt, I. J., Klomp, D. W. J., Luijten, P. R., van den Berg, C. A. T. & Raaijmakers, A. J. E., 1 Jan 2018, (Accepted/In press) In : Journal of Magnetic Resonance Imaging.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Signal-To-Noise Ratio
Prostate
Volunteers
Neoplasms
Protons

COMPAY 2018 preface

Ciompi, F., van der Laak, J., Rajpoot, N., McKenna, S., Veta, M. & Snead, D., 1 Jan 2018, In : Lecture Notes in Computer Science. 11039, p. VII

Research output: Contribution to journalEditorialAcademicpeer-review

Crowd disagreement of medical images is informative

Cheplygina, V. & Pluim, J. P. W., 21 Jun 2018, In : arXiv. 2018, 8 p., 1806.08174

Research output: Contribution to journalArticleAcademic

Open Access
File
Labels
Image analysis
Skin
Classifiers
2 Citations (Scopus)

Deformable image registration using convolutional neural networks

Eppenhof, K. A. J., Lafarge, M. W., Moeskops, P., Veta, M. & Pluim, J. P. W., 15 Mar 2018, Medical Imaging 2018 Image Processing. SPIE, Vol. 10574, 105740S

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

Open Access
File
Image registration
Parameterization
Neural networks
Three-Dimensional Imaging
parameterization
2 Citations (Scopus)

Denoising of 3D magnetic resonance images with multi-channel residual learning of convolutional neural network

Jiang, D., Dou, W., Vosters, L., Xu, X., Sun, Y. & Tan, T., 1 Sep 2018, In : Japanese Journal of Radiology. 36, 9, p. 566-574 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Noise
Magnetic Resonance Spectroscopy
Learning
Three-Dimensional Imaging
Information Storage and Retrieval
2 Citations (Scopus)

Early phacoemulsification after acute angle closure in patients with coexisting cataract

Romkens, H. C. S., Beckers, H. J. M., Schouten, J. S. A. G., Nuijts, R. M. M. A., Berendschot, T. T. J. M., Breusegem, C. M. & Webers, C. A. B., Aug 2018, In : Journal of Glaucoma. 27, 8, p. 711-716

Research output: Contribution to journalArticleAcademicpeer-review

6 Citations (Scopus)

Effect of active evaluation on the detection of negative dysphotopsia after sequential cataract surgery: discrepancy between incidences of unsolicited and solicited complaints

Makhotkina, N. Y., Nijkamp, M. D., Berendschot, T. T. J. M., van den Borne, B. & Nuijts, R. M. M. A., Feb 2018, In : Acta Ophthalmologica. 96, 1, p. 81-87

Research output: Contribution to journalArticleAcademicpeer-review

1 Citations (Scopus)

Effect of supplementary implantation of a sulcus-fixated intraocular lens in patients with negative dysphotopsia

Makhotkina, N. Y., Dugrain, V., Purchase, D., Berendschot, T. T. J. M. & Nuijts, R. M. M. A., Feb 2018, In : Journal of Cataract and Refractive Surgery. 44, 2, p. 209-218

Research output: Contribution to journalArticleAcademicpeer-review

Error estimation of deformable image registration of pulmonary CT scans using convolutional neural networks

Eppenhof, K. A. J. & Pluim, J. P. W., 1 Apr 2018, In : Journal of Medical Imaging. 5, 2, 12 p., 024003

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Lung
Three-Dimensional Imaging
Thorax

Estimating B1+ in the breast at 7 T using a generic template

van Rijssel, M. J., Pluim, J. P. W., Luijten, P. R., Gilhuijs, K. G. A., Raaijmakers, A. W. J. & Klomp, D. W. J., 1 May 2018, In : NMR in Biomedicine. 31, 5, 12 p., e3911

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Breast
Volunteers
Mean square error
Anatomy
Magnetic resonance imaging
3 Citations (Scopus)

Evaluation of a deep learning approach for the segmentation of brain tissues and white matter hyperintensities of presumed vascular origin in MRI

Moeskops, P., de Bresser, J., Kuijf, H. J., Mendrik, A. M., Biessels, G. J., Pluim, J. P. W. & Išgum, I., 2018, In : NeuroImage: Clinical. 17, p. 251-262 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Blood Vessels
Learning
Brain
Artifacts
Cerebrospinal Fluid
1 Citations (Scopus)

Exploratory study on direct prediction of diabetes using deep residual networks

Abbasi-Sureshjani, S., Dashtbozorg, B., ter Haar Romeny, B. M. & Fleuret, F., 2018, VipIMAGE2017. Tavares, J. M. R. S. & Jorge, R. M. N. (eds.). Springer, Vol. 27, p. 797-802 6 p. (Lecture notes in computational vision and biomechanics; vol. 27) (Lecture Notes in Computational Vision and Biomechanics).

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

Medical problems
Health
Glucose
Feature extraction
Image processing

Fast and unconditionally safe in vivo MR head protocol for home-made coil prototype assessment at 7T

Vignaud, A., Mauconduit, F., Gras, V., Boulant, N., Girard, O., Raaijmakers, A., Kober, F., Bihan, D. L. & Abdeddaim, R., 1 Jan 2018, In : Journal of Physics: Conference Series. 1092, 5 p., 012159

Research output: Contribution to journalConference articleAcademicpeer-review

Open Access
File
coils
prototypes
organs
photographic developers
acceptability

Feature learning based on visual similarity triplets in medical image analysis: A case study of emphysema in chest CT scans

Ørting, S. N., Petersen, J., Cheplygina, V., Thomsen, L. H., Wille, M. M. W. & Bruijne, M. D., 19 Jun 2018, In : arXiv. 2018, 10 p., 1806.07131

Research output: Contribution to journalArticleAcademic

Open Access
File
Computerized tomography
Image analysis
Neural networks
Pathology

Five-year endothelial cell loss after implantation with artiflex myopia and artiflex toric phakic intraocular lenses

Jonker, S. M. R., Berendschot, T. T. J. M., Ronden, A. E., Saelens, I. E. Y., Bauer, N. J. C. & Nuijts, R. M. M. A., 1 Oct 2018, In : American Journal of Ophthalmology. 194, p. 110-119 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Five year results with the Artiflex Toric phakic intraocular lens: long-term visual function, efficacy, safety and endothelial cell loss

Jonker, S. M. R., Berendschot, T. T. J. M., Saelens, I. E. Y., Bauer, N. J. C. & Nuijts, R. M. M. A., Mar 2018, In : Acta Ophthalmologica. 96, p. 36-36

Research output: Contribution to journalMeeting AbstractAcademic

Open Access
File

Functional and structural methods for minimally invasive treatment of epilepsy

Meesters, S. P. L., 29 Mar 2018, Eindhoven: Technische Universiteit Eindhoven. 161 p.

Research output: ThesisPhd Thesis 1 (Research TU/e / Graduation TU/e)Academic

Open Access
File
Epilepsy

Hemodynamic profile of glaucomatous eyes and a correlation with mean deviation, visual field index and retinal nerve fiber layer thickness

Berendschot, T. T. J. M., Mohan, A., Jariwala, M., Sudhakaran, S., Kumar, R. S., Shetty, R. & Webers, C. A. B., Mar 2018, In : Acta Ophthalmologica. 96, p. 22-22

Research output: Contribution to journalMeeting AbstractAcademic

Open Access
File
13 Citations (Scopus)

Individualized parcellation of the subthalamic nucleus in patients with Parkinson's disease with 7T MRI

Plantinga, B. R., Temel, Y., Duchin, Y., Uludağ, K., Patriat, R., Roebroeck, A., Kuijf, M., Jahanshahi, A., ter Haar Romenij, B., Vitek, J. & Harel, N., 1 Mar 2018, In : Neuroimage. 168, p. 403-411 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Subthalamic Nucleus
Parkinson Disease
Deep Brain Stimulation
Anterior Thalamic Nuclei
Electric Stimulation

Inferring a third spatial dimension from 2D histological images

Lafarge, M. W., Pluim, J. P. W., Eppenhof, K. A. J., Moeskops, P. & Veta, M., 10 Jan 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. Piscataway: IEEE Computer Society, Vol. 2018-April, p. 586-589 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

Tissue
Decomposition
Coloring Agents
Learning
Staining and Labeling

Interim analysis of a randomized controlled trial comparing ultrathin descemet stripping automated endothelial keratoplasty (UT-DSAEK) vs descemet membrane endothelial keratoplasty (DMEK)

Dunker, S. L., Dickman, M. M., Wisse, R. P. L., Nobacht, S., Wijdh, R. H. J., Bartels, M. C., Tang, N. E. M. L., van den Biggelaar, F. J. H. M., Berendschot, T. T. J. M. & Nuijts, R. M. M. A., Mar 2018, In : Acta Ophthalmologica. 96, p. 8-8

Research output: Contribution to journalMeeting AbstractAcademic

Open Access
File

Intersubject specific absorption rate variability analysis through construction of 23 realistic body models for prostate imaging at 7T

Meliadò, E. F., van den Berg, C. A. T., Luijten, P. R. & Raaijmakers, A. J. E., 10 Nov 2018, In : Magnetic Resonance in Medicine. 81, 3, p. 2106-2119 14 p.

Research output: Contribution to journalArticleAcademicpeer-review

Prostate
Databases
Safety
Normal Distribution
Volunteers

LABELS 2018 Preface

Sznitman, R., Cheplygina, V., Mateus, D., Maier-Hein, L., Granger, E., Jannin, P. & Trucco, E., 1 Jan 2018, Intravascular Imaging and Computer Assisted Stenting and Large-Scale Annotation of Biomedical Data and Expert Label Synthesis: 7th Joint International Workshop, CVII-STENT 2018 and Third International Workshop, LABELS 2018, Held in Conjunction with MICCAI 2018, Granada, Spain, September 16, 2018, Proceedings. Stoyanov, D., Taylor, Z., Balocco, S., Sznitman, R., Martel, A., Maier-Hein, L., Dong, L., Zahnd, G., Demerci, S., Albarqouni, S., Lee, S-L., Moriconi, S., Cheplygina, V., Mateus, D., Trucco, E., Granger, E. & Jannin, E. (eds.). Springer, p. IX (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11043)

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

6 Citations (Scopus)

Long-term endothelial cell loss in patients with artisan myopia and artisan toric phakic intraocular lenses 5- and 10-year results

Jonker, S. M. R., Berendschot, T. T. J. M., Ronden, A. E., Saelens, I. E. Y., Bauer, N. J. C. & Nuijts, R. M. M. A., Apr 2018, In : Ophthalmology. 125, 4, p. 486-494

Research output: Contribution to journalArticleAcademicpeer-review

Long-term outcomes of repeated Corneal Transplantations: a prospective Dutch registry study

Dickman, M. M., Spekreijse, L. S., Dunker, S. L., Winkens, B., Berendschot, T. T. J. M., van den Biggelaar, F. J. H. M., Kruit, P. J. & Nuijts, R. M. M. A., 1 Sep 2018, In : American Journal of Ophthalmology. 193, p. 156-165 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

2 Citations (Scopus)

Macular thinning in prediabetes or type 2 diabetes without diabetic retinopathy: the Maastricht Study

De Clerck, E. E. B., Schouten, J. S. A. G., Berendschot, T. T. J. M., Goezinne, F., Dagnelie, P. C., Schaper, N. C., Schram, M. T., Stehouwer, C. D. A. & Webers, C. A. B., Mar 2018, In : Acta Ophthalmologica. 96, 2, p. 174-182 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

MEG-guided analysis of 7T-MRI in patients with epilepsy

Colon, A. J., van Osch, M. J. P., Buijs, M., van de Grond, J., Hillebrand, A., Schijns, O., Wagner, G. J., Ossenblok, P., Hofman, P., Buchem, M. A. V. & Boon, P., 1 Aug 2018, In : Seizure. 60, p. 29-38 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Epilepsy
Partial Epilepsy