• Groene Loper, Building 15, Gemini-South 2.106, Secretary Rina van Dijck-Postma

    5612 AZ Eindhoven

    Netherlands

Research Output

2020

Accelerating implant RF safety assessment using a low-rank inverse update method

Stijnman, P. R. S., Tokaya, J. P., van Gemert, J., Luijten, P. R., Pluim, J. P. W., Brink, W. M., Remis, R. F., van den Berg, C. A. T. & Raaijmakers, A. J. E., 1 May 2020, In : Magnetic Resonance in Medicine. 83, 5, p. 1796-1809 14 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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A deep learning method for image-based subject-specific local SAR assessment

Meliadò, E. F., Raaijmakers, A. J. E., Sbrizzi, A., Steensma, B. R., Maspero, M., Savenije, M. H. F., Luijten, P. R. & van den Berg, C. A. T., 1 Feb 2020, In : Magnetic Resonance in Medicine. 83, 2, p. 695-711 17 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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1 Citation (Scopus)
10 Downloads (Pure)

A systematic approach to evaluate practice-based process- and outcome data applied to the treatment of neovascular age-related macular degeneration

van der Reis, M. I., Elshout, M., Berendschot, T. T. J. M., de Jong-Hesse, Y., Webers, C. A. B. & Schouten, J. S. A. G., 9 Jan 2020, In : BMC Ophthalmology. 20, 1, 10 p., 21.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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Automatic corneal nerve fiber segmentation and geometric biomarker quantification

Zhang, D., Huang, F., Khansari, M., Berendschot, T. T. J. M., Xu, X., Dashtbozorg, B., Sun, Y., Zhang, J. & Tan, T., 20 Feb 2020, In : European Physical Journal. Plus. 135, 2, p. 266 16 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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Fast contour propagation for MR-guided prostate radiotherapy using CNNs

Eppenhof, K. A. J., Maspero, M., Savenije, M. H. F., de Boer, J. C. J., van der Voort van Zyp, J. R. N., Raaymakers, B. W., Raaijmakers, A., Veta, M., Pluim, J. P. W. & van den Berg, C. A. T., 15 Jan 2020, (Accepted/In press).

Research output: Contribution to conferenceAbstract

Fast contour propagation for MR‐guided prostate radiotherapy using convolutional neural networks

Eppenhof, K. A. J., Maspero, M., Savenije, M. H. F., de Boer, J. C. J., van der Voort van Zyp, J. R. N., Raaymakers, B. W., Raaijmakers, A., Veta, M., van den Berg, C. A. T. & Pluim, J. P. W., Mar 2020, In : Medical Physics. 47, 3, p. 1238-1248 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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Hierarchical Bayesian myocardial perfusion quantification

Scannell, C. M., Chiribiri, A., Villa, A. D. M., Breeuwer, M. & Lee, J., Feb 2020, In : Medical Image Analysis. 60, 12 p., 101611.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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Microvascular dysfunction is associated with worse cognitive performance the Maastricht study

Rensma, S. P., van Sloten, T. T., Houben, A. J. H. M., Koehler, S., van Boxtel, M. P. J., Berendschot, T. T. J. M., Jansen, J. F. A., Verhey, F. R. J., Kroon, A. A., Koster, A., Backes, W. H., Schaper, N., Dinant, G-J., Schalkwijk, C. G., Henry, R. M. A., Wolfs, E. M. L., van Heumen, M. J. A., Schram, M. T. & Stehouwer, C. D. A., Jan 2020, In : Hypertension. 75, 1, p. 237-245 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

MRI-based transfer function determination through the transfer matrix by jointly fitting the incident and scattered B1+ field

Tokaya, J. P., Raaijmakers, A. J. E., Luijten, P. R., Sbrizzi, A. & van den Berg, C. A. T., 1 Mar 2020, In : Magnetic Resonance in Medicine. 83, 3, p. 1081-1095 15 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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Reduced corneal nerve fibre length in prediabetes and type 2 diabetes: the Maastricht Study

de Clerck, E. E. B., Schouten, J. S. A. G., Berendschot, T. T. J. M., Koolschijn, R. S., Nuijts, R. M. M. A., Schram, M. T., Schaper, N. C., Henry, R. M. A., Dagnelie, P. C., Ruggeri, A., Guimarães, P., Stehouwer, C. D. A. & Webers, C. A. B., 3 Feb 2020, In : Acta Ophthalmologica.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Supervised deformable image registration using deep neural networks

Eppenhof, K. A. J., 11 Feb 2020, Eindhoven: Technische Universiteit Eindhoven. 119 p.

Research output: ThesisPhd Thesis 1 (Research TU/e / Graduation TU/e)

Open Access
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Ten simple rules for getting started on Twitter as a scientist

Cheplygina, V., Hermans, F., Albers, C., Bielczyk, N. & Smeets, I., 1 Feb 2020, In : PLoS Computational Biology. 16, 2, 9 p., e1007513.

Research output: Contribution to journalEditorialAcademicpeer-review

Open Access
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Ultrasound based wall stress analysis of abdominal aortic aneurysms using multiperspective imaging

van Disseldorp, E. M. J., van Dronkelaar, J. J., Pluim, J. P. W., van de Vosse, F. N., van Sambeek, M. R. H. M. & Lopata, R. G. P., 1 Jan 2020, In : European Journal of Vascular and Endovascular Surgery. 59, 1, p. 81-91 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2019
Open Access
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Approximation of a pipeline of unsupervised retina image analysis methods with a CNN

Heslinga, F., Pluim, J., Dasht Bozorg, B., Berendschot, T., Houben, A. J. H. M., Henry, R. M. A. & Veta, M., 1 Mar 2019, Image Processing: SPIE Medical Imaging, 2019, San Diego, California, United States. Angelini, E. D. & Landman, B. A. (eds.). Bellingham: SPIE, 7 p. 109491N. (Proceedings of SPIE; vol. 10949).

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

Open Access
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1 Citation (Scopus)
27 Downloads (Pure)

A survey of crowdsourcing in medical image analysis

Ørting, S., Doyle, A., Hirth, M., van Hilten, A., Inel, O., Madan, C. R., Mavridis, P., Spiers, H. & Cheplygina, V., 25 Feb 2019, In : arXiv. 12 p., 1902.09159.

Research output: Contribution to journalArticleAcademic

Open Access
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18 Downloads (Pure)

Automated clear cell renal carcinoma grade classification with prognostic significance

Tian, K., Rubadue, C. A., Lin, D. I., Veta, M., Pyle, M. E., Irshad, H. & Heng, Y. J., 1 Jan 2019, In : PLoS ONE. 14, 10, 16 p., e0222641.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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Automatic cardiac landmark localization by a recurrent neural network

van Zon, M., Veta, M. & Li, S., 1 Jan 2019, Medical Imaging 2019: Image Processing. Landman, B. A. & Angelini, E. D. (eds.). Bellingham: SPIE, 13 p. 1094916. (Proceedings of SPIE; vol. 10949).

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

1 Downloads (Pure)

Automatic classification of focal liver lesions based on MRI and risk factors

Jansen, M. J. A., Kuijf, H. J., Veldhuis, W. B., Wessels, F. J., Viergever, M. A. & Pluim, J. P. W., May 2019, In : PLoS ONE. 14, 5, 13 p., e0217053.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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Benchmark on automatic 6-month-old infant brain segmentation algorithms: The iSeg-2017 Challenge

Wang, L., Nie, D., Li, G., Puybareau, E., Dolz, J., Zhang, Q., Wang, F., Xia, J., Wu, Z., Chen, J., Thung, K-H., Bui, T. D., Shin, J., Zeng, G., Zheng, G., Fonov, V. S., Doyle, A., Xu, Y., Moeskops, P., Pluim, J. P. W. & 9 others, Desrosiers, C., Ayed, I. B., Sanroma, G., Benkarim, O. M., Casamitjana, A., Vilaplana, V., Lin, W., Li, G. & Shen, D., 27 Feb 2019, In : IEEE Transactions on Medical Imaging. 38, 9, p. 2219-2230

Research output: Contribution to journalArticleAcademicpeer-review

Blood pressure variability and microvascular dysfunction: The Maastricht Study

Rensma, S., Zhou, T., van der Heide, F., Henry, R., Kroon, A., Jansen, J., Backes, W., Berendschot, T., Eussen, S., Dagnelie, P., Webers, C., Schram, M., Schalkwijk, C., van Sloten, T. & Stehouwer, C., 1 Sep 2019, In : Diabetologia. 62, Suppl 1, p. S491-S492 1012.

Research output: Contribution to journalMeeting AbstractAcademic

Carotid stiffness is associated with retinal microvascular dysfunction: the Maastricht study

Zhou, T., van der Heide, F. C. T., Henry, R. M. A., Houben, A. J. H., Kroon, A. A., van der Kallen, C. J. H., Dagnelie, P. C., Eussen, S. J. P., Berendschot, T. T. J., Schouten, J. S. A., Schram, M. T., van Greevenbroek, M. M. J., Wesselius, A., Reesink, K. D. & Stehouwer, C. D. A., Sep 2019, In : Diabetologia. 62, Supp. 1, p. S501-S501 1032.

Research output: Contribution to journalMeeting AbstractAcademic

Cats or CAT scans: transfer learning from natural or medical image source data sets?

Cheplygina, V., Mar 2019, In : Current Opinion in Biomedical Engineering. 9, p. 21-27 7 p.

Research output: Contribution to journalReview articleAcademicpeer-review

Open Access
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2 Citations (Scopus)
28 Downloads (Pure)

Characteristics of the retinal microvasculature in association with cardiovascular risk markers in children with overweight, obesity and morbid obesity

Berendschot, T. T. J. M., Rijks, J., Vreugdenhil, A., Dorenbos, E., Karnebeek, K., Joris, P., Mensink, R. & Plat, J., 2019, In : Journal of Vascular Research. 56, S1, p. 13-13

Research output: Contribution to journalMeeting AbstractAcademic

Open Access

Comparing signal-to-noise ratio for prostate imaging at 7T and 3T

Steensma, B. R., Luttje, M., Voogt, I. J., Klomp, D. W. J., Luijten, P. R., van den Berg, C. A. T. & Raaijmakers, A. J. E., May 2019, In : Journal of Magnetic Resonance Imaging. 49, 5, p. 1446-1455 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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2 Citations (Scopus)
36 Downloads (Pure)

Confocal Raman spectroscopy: Evaluation of a non-invasive technique for the detection of topically applied ketorolac tromethamine in vitro and in vivo

Bertens, C. J. F., Zhang, S., Erckens, R. J., van den Biggelaar, F. J. H. M., Berendschot, T. T. J. M., Webers, C. A. B., Nuijts, R. M. M. A. & Gijs, M., 30 Oct 2019, In : International Journal of Pharmaceutics. 570, 9 p., 118641.

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Convolutional neural network-based regression for quantification of brain characteristics using MRI

Fernandes, J., Alves, V., Khalili, N., Benders, M. J. N. L., Išgum, I., Pluim, J. & Moeskops, P., 30 Mar 2019, New Knowledge in Information Systems and Technologies. Reis, L. P., Costanzo, S., Adeli, H. & Rocha, Á. (eds.). Berlin: Springer, Vol. 2. p. 577-586 10 p. (Advances in Intelligent Systems and Computing; vol. 931).

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

1 Downloads (Pure)

Convolutional neural networks for segmentation of the left atrium from gadolinium-enhancement MRI images

de Vente, C., Veta, M., Razeghi, O., Niederer, S., Pluim, J., Rhode, K. & Karim, R., 14 Feb 2019, Statistical Atlases and Computational Models of the Heart. Atrial Segmentation and LV Quantification Challenges - 9th International Workshop, STACOM 2018, Held in Conjunction with MICCAI 2018, Revised Selected Papers. McLeod, K., Mansi, T., Young, A., Rhode, K., Zhao, J., Li, S., Pop, M. & Sermesant, M. (eds.). Cham: Springer, p. 348-356 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11395 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

1 Citation (Scopus)
4 Downloads (Pure)

Correcting time-intensity curves in dynamic contrast-enhanced breast MRI for inhomogeneous excitation fields at 7T

van Rijssel, M. J., Pluim, J. P. W., Chan, H-S. M., van den Wildenberg, L., Schmitz, A. M. T., Luijten, P. R., Gilhuijs, K. G. A. & Klomp, D. W. J., 27 Dec 2019, In : Magnetic Resonance in Medicine.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Correction: Automatic emphysema detection using weakly labeled HRCT lung images (PLoS ONE (2018) 13:10 (e0205397) DOI: 10.1371/journal.pone.0205397)

Pena, I. P., Cheplygina, V., Paschaloudi, S., Vuust, M., Carl, J., Weinreich, U. M., Ostergaard, L. R. & de Bruijne, M., 1 Aug 2019, In : PLoS ONE. 14, 8, 1 p., e0220873.

Research output: Contribution to journalComment/Letter to the editorAcademicpeer-review

Open Access
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Cross-scanner and cross-protocol harmonisation of multi-shell diffusion MRI data: open challenge and evaluation results

Ning, L., Bonet-Carne, E., Grussu, F., Sepehrband, F., Kaden, E., Veraart, J., Blumberg, S. B., Khoo, C. S., Palombo, M., Coll-Font, J., Scherrer, B., Warfield, S. K., Karayumak, S. C., Rathi, Y., Koppers, S., Weninger, L., Ebert, J., Merhof, D., Moyer, D., Pietsch, M. & 11 others, Christiaens, D., Teixeira, R., Tournier, J-D., Zhylka, A., Pluim, J., Parker, G., Rudrapatna, U., Evans, J., Charron, C., Jones, D. K. & Tax, C. W. M., 2019. 4 p.

Research output: Contribution to conferenceAbstract

Open Access

Deep learning-based prediction of kinetic parameters from myocardial perfusion MRI

Scannell, C. M., Bosch, P. V. D., Chiribiri, A., Lee, J., Breeuwer, M. & Veta, M., 27 Jul 2019, In : arXiv. 4 p., 1907.11899v1.

Research output: Contribution to journalArticleAcademic

Open Access
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Deep-learning-based preprocessing for quantitative myocardial perfusion MRI

Scannell, C. M., Veta, M., Villa, A. D. M., Sammut, E. C., Lee, J., Breeuwer, M. & Chiribiri, A., 11 Nov 2019, In : Journal of Magnetic Resonance Imaging.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Deep learning networks to segment and detect breast terminal duct lobular units, acini, and adipose tissue: a step toward the automated analysis of lobular involution as a marker for breast cancer risk

Onken, A., Wetstein, S., Pyle, M., Pluim, J., Schnitt, S., Baker, G., Collins, L., Tamimi, R., Veta, M. & Heng, Y., 2019, United States and Canadian Academy of Pathology (USCAP).

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademic

Deep learning with convolutional neural networks for histopathology image analysis

Bosnacki, D., van Riel, N. A. W. & Veta, M., 2019, Automated reasoning for systems biology and medicine. Lio, P. & Zuliani, P. (eds.). Springer, p. 453-469 (Computational Biology Series; vol. 30).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Detection of acini in histopathology slides: towards automated prediction of breast cancer risk

Wetstein, S., Onken, A., Baker, G., Pyle, M., Pluim, J., Tamimi, R., Heng, Y. & Veta, M., 18 Mar 2019, Medical Imaging 2019: Digital Pathology. Tomaszewski, J. E. & Ward, A. D. (eds.). Bellingham, 7 p. 109560Q. (Proceedings of SPIE; vol. 10956).

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

6 Downloads (Pure)

Early phacoemulsification after acute angle closure in patients with coexisting cataract

Romkens, H. C. S., Beckers, H. J. M., Schouten, J. S. A. G., Nuijts, R. M. M. A., Berendschot, T. T. J. M., Breusegem, C. M. & Webers, C. A. B., 1 Feb 2019, In : Journal of Glaucoma. 28, 2, p. E34-E35

Research output: Contribution to journalLetterAcademicpeer-review

1 Citation (Scopus)

Epileptic seizure detection in EEG signals using sparse multiscale radial basis function networks and the Fisher vector approach

Li, Y., Cui, W. G., Huang, H., Guo, Y. Z., Li, K. & Tan, T., 15 Jan 2019, In : Knowledge-Based Systems. 164, p. 96-106 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

9 Citations (Scopus)

Examination of retinal vascular trajectory in schizophrenia and bipolar disorder

Appaji, A., Nagendra, B., Chako, D. M., Padmanabha, A., Jacob, A., Hiremath, C. V., Varambally, S., Kesavan, M., Venkatasubramanian, G., Rao, S. V., Webers, C. A. B., Berendschot, T. T. J. M. & Rao, N. P., 1 Dec 2019, In : Psychiatry and Clinical Neurosciences. 73, 12, p. 738-744 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

First generation versus second generation toric calculator for toric IOL implantations

Webers, V. S. C., Bauer, N. J. C., Visser, N., Berendschot, T. T. T. J. M., Saelens, I. E. Y., Beckers, H. J. M. & Nuijts, R. M. M. A., Mar 2019, In : Acta Ophthalmologica. 97, S262, p. 36-37 2 p.

Research output: Contribution to journalMeeting AbstractAcademic

Fourier transform on the homogeneous space of 3D positions and orientations for exact solutions to linear PDEs

Duits, R., Bekkers, E. J. & Mashtakov, A., 8 Jan 2019, In : Entropy. 21, 1, 38 p., 38.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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1 Citation (Scopus)
32 Downloads (Pure)

Habitual higher order aberrations affect Landolt but not Vernier acuity

Reiniger, J. L., Lobecke, A. C., Sabesan, R., Bach, M., Verbakel, F., de Brabander, J., Holz, F. G., Berendschot, T. T. J. M. & Harmening, W. M., 1 May 2019, In : Journal of Vision. 19, 5, p. 1-15 15 p., 11.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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1 Citation (Scopus)
21 Downloads (Pure)

Hierarchical Bayesian myocardial perfusion quantification

Scannell, C. M., Chiribiri, A., Villa, A. D. M., Breeuwer, M. & Lee, J., 6 Jun 2019, In : arXiv. 2019, 37 p., 1906.02540.

Research output: Contribution to journalArticleAcademic

Open Access
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Higher levels of daily physical activity are associated with better skin microvascular function in type 2 diabetes: The Maastricht Study

van der Heide, F. C. T., Houben, A. J. H., Sorensen, B. M., Kroon, A. A., van der Kallen, C. J. H., Henry, R. M. A., Eussen, S. J. P., Schaper, N. C., Savelberg, H. C. M., Berendschot, T. T. J., Koster, A., van Dongen, M. C. J., van der Berg, J. D., Schram, M. T. & Stehouwer, C. D. A., 1 Sep 2019, In : Diabetologia. 62, Suppl 1, p. S546-S546 1133.

Research output: Contribution to journalMeeting AbstractAcademic

Homogeneous B1+ for bilateral breast imaging at 7 T using a five dipole transmit array merged with a high density receive loop array

Krikken, E., Steensma, B. R., Voogt, I. J., Luijten, P. R., Klomp, D. W. J., Raaijmakers, A. J. E. & Wijnen, J. P., 1 Feb 2019, In : NMR in Biomedicine. 32, 2, 8 p., 4039.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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2 Citations (Scopus)
8 Downloads (Pure)

Increased high-density Lipoprotein levels associated with age-related macular degeneration: evidence from the EYE-RISK and European Eye Epidemiology Consortia

European Eye Epidemiology Consortium, EYE-RISK Consortium, Klaver, C. C. W. & Berendschot, T., 1 Mar 2019, In : Ophthalmology. 126, 3, p. 393-406 14 p.

Research output: Contribution to journalArticleAcademicpeer-review

14 Citations (Scopus)

In reply: early phacoemulsification after acute angle closure in patients with coexisting cataract

Romkens, H. C. S., Beckers, H. J. M., Schouten, J. S. A. G., Nuijts, R. M. M. A., Berendschot, T. T. J. M., Breusegem, C. M. & Webers, C. A. B., 1 Mar 2019, In : Journal of Glaucoma. 28, 3, p. E51

Research output: Contribution to journalLetterAcademicpeer-review

Intersubject specific absorption rate variability analysis through construction of 23 realistic body models for prostate imaging at 7T

Meliadò, E. F., van den Berg, C. A. T., Luijten, P. R. & Raaijmakers, A. J. E., Mar 2019, In : Magnetic Resonance in Medicine. 81, 3, p. 2106-2119 14 p.

Research output: Contribution to journalArticleAcademicpeer-review

3 Citations (Scopus)

In vitro and in vivo datasets of topically applied ketorolac tromethamine in aqueous humor using Raman spectroscopy

Zhang, S., Bertens, C. J. F., Erckens, R. J., van den Biggelaar, F. J. H. M., Berendschot, T. T. J. M., Webers, C. A. B., Nuijts, R. M. M. A. & Gijs, M., Dec 2019, In : Data in Brief. 27, 9 p., 104694.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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Learning domain-invariant representations of histological images

Lafarge, M. W., Pluim, J. P. W., Eppenhof, K. A. J. & Veta, M., 16 Jul 2019, In : Frontiers in Medicine. 6, 11 p., 162.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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