• Groene Loper, Building 15, Gemini-South 2.106, Secretary Rina van Dijck-Postma

    5612 AZ Eindhoven

    Netherlands

Research Output

2020

3D deformable registration of longitudinal abdominopelvic CT images using unsupervised deep learning

Eijnatten, M. V., Rundo, L., Batenburg, K. J., Lucka, F., Beddowes, E., Caldas, C., Gallagher, F. A., Sala, E., Schönlieb, C-B. & Woitek, R., 15 May 2020, In : Computer Methods and Programs in Biomedicine.

Research output: Contribution to journalArticleAcademic

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1 Downloads (Pure)

4D semantic cardiac magnetic resonance image synthesis on XCAT anatomical model

Abbasi-Sureshjani, S., Amirrajab, S., Lorenz, C., Weese, J., Pluim, J. & Breeuwer, M., 17 Feb 2020, In : arXiv.org, e-Print Archive, Physics. 13 p., 2002.07089.

Research output: Contribution to journalArticleAcademic

Open Access
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6 Downloads (Pure)

Accelerating implant RF safety assessment using a low-rank inverse update method

Stijnman, P. R. S., Tokaya, J. P., van Gemert, J., Luijten, P. R., Pluim, J. P. W., Brink, W. M., Remis, R. F., van den Berg, C. A. T. & Raaijmakers, A. J. E., 1 May 2020, In : Magnetic Resonance in Medicine. 83, 5, p. 1796-1809 14 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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25 Downloads (Pure)

A deep learning method for image-based subject-specific local SAR assessment

Meliadò, E. F., Raaijmakers, A. J. E., Sbrizzi, A., Steensma, B. R., Maspero, M., Savenije, M. H. F., Luijten, P. R. & van den Berg, C. A. T., 1 Feb 2020, In : Magnetic Resonance in Medicine. 83, 2, p. 695-711 17 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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3 Citations (Scopus)
20 Downloads (Pure)

Adversarial Attack Vulnerability of Medical Image Analysis Systems: Unexplored Factors

Wetstein, S. C., González-Gonzalo, C., Bortsova, G., Liefers, B., Dubost, F., Katramados, I., Hogeweg, L., Ginneken, B. V., Pluim, J. P. W., Bruijne, M. D., Sánchez, C. I. & Veta, M., 11 Jun 2020, In : arXiv.

Research output: Contribution to journalArticleAcademic

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2 Downloads (Pure)

Associations of Arterial Stiffness With Cognitive Performance, and the Role of Microvascular Dysfunction: The Maastricht Study

Rensma, S. P., Stehouwer, C. D. A., van Boxtel, M. P. J., Houben, A. J. H. M., Berendschot, T. T. J. M., Jansen, J. F. A., Schalkwijk, C. G., Verhey, F. R. J., Kroon, A. A., Henry, R. M. A., Backes, W. H., Dagnelie, P. C., van Dongen, M. C. J. M., Eussen, S. J. P. M., Bosma, H., Köhler, S., Reesink, K. D., Schram, M. T. & van Sloten, T. T., 1 Jun 2020, In : Hypertension (Dallas, Tex. : 1979). 75, 6, p. 1607-1614 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

A systematic approach to evaluate practice-based process- and outcome data applied to the treatment of neovascular age-related macular degeneration

van der Reis, M. I., Elshout, M., Berendschot, T. T. J. M., de Jong-Hesse, Y., Webers, C. A. B. & Schouten, J. S. A. G., 9 Jan 2020, In : BMC Ophthalmology. 20, 1, 10 p., 21.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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Automatic analysis of normative retinal oximetry images

Kumar, J. R. H., Seelamantula, C. S., Mohan, A., Shetty, R., Berendschot, T. J. M. & Webers, C. A. B., 18 May 2020, In : PLoS ONE. 15, 5, 15 p., e0231677.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Automatic corneal nerve fiber segmentation and geometric biomarker quantification

Zhang, D., Huang, F., Khansari, M., Berendschot, T. T. J. M., Xu, X., Dashtbozorg, B., Sun, Y., Zhang, J. & Tan, T., 20 Feb 2020, In : European Physical Journal. Plus. 135, 2, 16 p., 266.

Research output: Contribution to journalArticleAcademicpeer-review

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Comparison of the intermediate distance of a trifocal IOL with an extended depth-of-focus IOL: results of a prospective randomized trial

Webers, V. S. C., Bauer, N. J. C., Saelens, I. E. Y., Creten, O. J. M., Berendschot, T. T. J. M., van den Biggelaar, F. J. H. M. & Nuijts, R. M. M. A., 1 Feb 2020, In : Journal of Cataract and Refractive Surgery. 46, 2, p. 193-203 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Contributing ocular comorbidity to end-of-life visual acuity in medically treated glaucoma patients, ocular hypertension and glaucoma suspect patients

Mokhles, P., van Gorcom, L., Schouten, J. S. A. G., Berendschot, T. T. J. M., Beckers, H. J. M. & Webers, C. A. B., 3 Jun 2020, In : Eye.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Deep learning assessment of breast terminal duct lobular unit involution: towards automated prediction of breast cancer risk

Wetstein, S. C., Onken, A. M., Luffman, C., Baker, G. M., Pyle, M. E., Kensler, K. H., Liu, Y., Bakker, B., Vlutters, R., van Leeuwen, M. B., Collins, L. C., Schnitt, S. J., Pluim, J. P. W., Tamimi, R. M., Heng, Y. J. & Veta, M., 15 Apr 2020, In : PLoS ONE. 15, 4, 16 p., e0231653.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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Deep-learning-based preprocessing for quantitative myocardial perfusion MRI

Scannell, C. M., Veta, M., Villa, A. D. M., Sammut, E. C., Lee, J., Breeuwer, M. & Chiribiri, A., Jun 2020, In : Journal of Magnetic Resonance Imaging. 51, 6, p. 1689-1696 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Direct classification of type 2 diabetes from retinal fundus images in a population-based sample from the Maastricht study

Heslinga, F. G., Pluim, J. P. W., Houben, A. J. H. M., Schram, M. T., Henry, R. M. A., Stehouwer, C. D. A., Van Greevenbroek, M. J., Berendschot, T. T. J. M. & Veta, M., 1 Jan 2020, Medical Imaging 2020: Computer-Aided Diagnosis. Hahn, H. K. & Mazurowski, M. A. (eds.). SPIE, 113141N. (Proceedings of SPIE; vol. 11314).

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

Effective self-management for early career researchers in the natural and life sciences

OHBM Student and Postdoc Special Interest Group, 22 Apr 2020, In : Neuron. 106, 2, p. 212-217 6 p.

Research output: Contribution to journalArticleAcademicpeer-review

Fast contour propagation for MR-guided prostate radiotherapy using CNNs

Eppenhof, K. A. J., Maspero, M., Savenije, M. H. F., de Boer, J. C. J., van der Voort van Zyp, J. R. N., Raaymakers, B. W., Raaijmakers, A., Veta, M., Pluim, J. P. W. & van den Berg, C. A. T., 15 Jan 2020, (Accepted/In press).

Research output: Contribution to conferenceAbstractAcademic

Fast contour propagation for MR‐guided prostate radiotherapy using convolutional neural networks

Eppenhof, K. A. J., Maspero, M., Savenije, M. H. F., de Boer, J. C. J., van der Voort van Zyp, J. R. N., Raaymakers, B. W., Raaijmakers, A., Veta, M., van den Berg, C. A. T. & Pluim, J. P. W., 1 Mar 2020, In : Medical Physics. 47, 3, p. 1238-1248 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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4 Citations (Scopus)
27 Downloads (Pure)

Hierarchical Bayesian myocardial perfusion quantification

Scannell, C. M., Chiribiri, A., Villa, A. D. M., Breeuwer, M. & Lee, J., Feb 2020, In : Medical Image Analysis. 60, 12 p., 101611.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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Higher levels of daily physical activity are associated with better skin microvascular function in type 2 diabetes—The Maastricht Study

Sörensen, B. M., van der Heide, F. C. T., Houben, A. J. H. M., Koster, A., Berendschot, T. T. J. M., Schouten, J. S. A. G., Kroon, A. A., van der Kallen, C. J. H., Henry, R. M. A., van Dongen, M. C. J. M., Eussen, S. J. P. M., Savelberg, H. H. C. M., van der Berg, J. D., Schaper, N. C., Schram, M. T. & Stehouwer, C. D. A., 1 May 2020, In : Microcirculation. 27, 4, e12611.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Microvascular dysfunction is associated with worse cognitive performance the Maastricht study

Rensma, S. P., van Sloten, T. T., Houben, A. J. H. M., Koehler, S., van Boxtel, M. P. J., Berendschot, T. T. J. M., Jansen, J. F. A., Verhey, F. R. J., Kroon, A. A., Koster, A., Backes, W. H., Schaper, N., Dinant, G-J., Schalkwijk, C. G., Henry, R. M. A., Wolfs, E. M. L., van Heumen, M. J. A., Schram, M. T. & Stehouwer, C. D. A., Jan 2020, In : Hypertension. 75, 1, p. 237-245 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

MRI-based transfer function determination through the transfer matrix by jointly fitting the incident and scattered B1+ field

Tokaya, J. P., Raaijmakers, A. J. E., Luijten, P. R., Sbrizzi, A. & van den Berg, C. A. T., 1 Mar 2020, In : Magnetic Resonance in Medicine. 83, 3, p. 1081-1095 15 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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1 Citation (Scopus)
17 Downloads (Pure)

Progressively trained convolutional neural networks for deformable image registration

Eppenhof, K., Lafarge, M., Veta, M. & Pluim, J., 7 May 2020, In : IEEE Transactions on Medical Imaging. 39, 5, p. 1594-1604 11 p., 8902170.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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1 Citation (Scopus)
14 Downloads (Pure)

Quality and denoising in real-time functional magnetic resonance imaging neurofeedback: A methods review

Heunis, S., Lamerichs, R., Zinger, S., Caballero-Gaudes, C., Jansen, J. F. A., Aldenkamp, B. & Breeuwer, M., 25 Apr 2020, In : Human Brain Mapping.

Research output: Contribution to journalReview articleAcademicpeer-review

Open Access

Reduced corneal nerve fibre length in prediabetes and type 2 diabetes: the Maastricht Study

de Clerck, E. E. B., Schouten, J. S. A. G., Berendschot, T. T. J. M., Koolschijn, R. S., Nuijts, R. M. M. A., Schram, M. T., Schaper, N. C., Henry, R. M. A., Dagnelie, P. C., Ruggeri, A., Guimarães, P., Stehouwer, C. D. A. & Webers, C. A. B., 3 Feb 2020, In : Acta Ophthalmologica.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Relation between retinal vascular abnormalities and working memory impairment in patients with schizophrenia and bipolar disorder

Appaji, A., Nagendra, B., Chako, D. M., Padmanabha, A., Jacob, A., Hiremath, C. V., Varambally, S., Kesavan, M., Venkatasubramanian, G., Rao, S. V., Webers, C. A. B., Berendschot, T. T. J. M. & Rao, N. P., Mar 2020, In : Asian Journal of Psychiatry. 49, 101942.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Risk Factors for the Development of Ocular Hypertension After Keratoplasty: A Systematic Review

Liesenborghs, I., Schouten, J. S. A. G., Berendschot, T. T. J. M., Beckers, H. J. M., Nuijts, R. M. M. A., Visser, N. & Webers, C. A. B., 1 Mar 2020, In : Cornea. 39, 3, p. 394-402 9 p.

Research output: Contribution to journalReview articleAcademicpeer-review

Open Access

Risk of Training Diagnostic Algorithms on Data with Demographic Bias

Abbasi-Sureshjani, S., Raumanns, R., Michels, B. E. J., Schouten, G. & Cheplygina, V., 20 May 2020, In : arXiv.

Research output: Contribution to journalArticleAcademic

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2 Downloads (Pure)

Supervised deformable image registration using deep neural networks

Eppenhof, K. A. J., 11 Feb 2020, Eindhoven: Technische Universiteit Eindhoven. 119 p.

Research output: ThesisPhd Thesis 1 (Research TU/e / Graduation TU/e)

Open Access
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128 Downloads (Pure)

Ten simple rules for getting started on Twitter as a scientist

Cheplygina, V., Hermans, F., Albers, C., Bielczyk, N. & Smeets, I., 1 Feb 2020, In : PLoS Computational Biology. 16, 2, 9 p., e1007513.

Research output: Contribution to journalEditorialAcademicpeer-review

Open Access
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20 Downloads (Pure)

Type 2 diabetes and HbA1c are independently associated with wider retinal arterioles: the Maastricht study

Li, W., Schram, M. T., Berendschot, T. T. J. M., Webers, C. A. B., Kroon, A. A., van der Kallen, C. J. H., Henry, R. M. A., Schaper, N. C., Huang, F., Dashtbozorg, B., Tan, T., Zhang, J., Abbasi-Sureshjani, S., ter Haar Romeny, B. M., Stehouwer, C. D. A. & Houben, A. J. H. M., 1 Jul 2020, In : Diabetologia. 63, 7, p. 1408-1417 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Ultrasound based wall stress analysis of abdominal aortic aneurysms using multiperspective imaging

van Disseldorp, E. M. J., van Dronkelaar, J. J., Pluim, J. P. W., van de Vosse, F. N., van Sambeek, M. R. H. M. & Lopata, R. G. P., 1 Jan 2020, In : European Journal of Vascular and Endovascular Surgery. 59, 1, p. 81-91 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
1 Citation (Scopus)
2019
Open Access
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20 Downloads (Pure)

Approximation of a pipeline of unsupervised retina image analysis methods with a CNN

Heslinga, F., Pluim, J., Dasht Bozorg, B., Berendschot, T., Houben, A. J. H. M., Henry, R. M. A. & Veta, M., 1 Mar 2019, Image Processing: SPIE Medical Imaging, 2019, San Diego, California, United States. Angelini, E. D. & Landman, B. A. (eds.). Bellingham: SPIE, 7 p. 109491N. (Proceedings of SPIE; vol. 10949).

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

Open Access
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2 Citations (Scopus)
40 Downloads (Pure)

Assessing breast terminal duct lobular unit involution: a computational pathology approach: Poster No. 103

Luffman, C., Wetstein, S., Onken, A., Pyle, M. E., Kensler, K. H., Liu, Y., Pluim, J. P. W., Veta, M., Schnitt, S., Tamimi, R., Baker, G., Collins, L. & Heng, Y. J., 1 Sep 2019, In : Archives of Pathology and Laboratory Medicine. 143, 9, p. e149

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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A survey of crowdsourcing in medical image analysis

Ørting, S., Doyle, A., Hirth, M., van Hilten, A., Inel, O., Madan, C. R., Mavridis, P., Spiers, H. & Cheplygina, V., 25 Feb 2019, In : arXiv. 12 p., 1902.09159.

Research output: Contribution to journalArticleAcademic

Open Access
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24 Downloads (Pure)

Automated clear cell renal carcinoma grade classification with prognostic significance

Tian, K., Rubadue, C. A., Lin, D. I., Veta, M., Pyle, M. E., Irshad, H. & Heng, Y. J., 3 Oct 2019, In : PLoS ONE. 14, 10, 16 p., e0222641.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
1 Citation (Scopus)
20 Downloads (Pure)

Automatic cardiac landmark localization by a recurrent neural network

van Zon, M., Veta, M. & Li, S., 1 Jan 2019, Medical Imaging 2019: Image Processing. Landman, B. A. & Angelini, E. D. (eds.). Bellingham: SPIE, 13 p. 1094916. (Proceedings of SPIE; vol. 10949).

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

1 Downloads (Pure)

Automatic classification of focal liver lesions based on MRI and risk factors

Jansen, M. J. A., Kuijf, H. J., Veldhuis, W. B., Wessels, F. J., Viergever, M. A. & Pluim, J. P. W., May 2019, In : PLoS ONE. 14, 5, 13 p., e0217053.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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1 Citation (Scopus)
33 Downloads (Pure)

Benchmark on automatic six-month-old infant brain segmentation algorithms: The iSeg-2017 Challenge

Wang, L., Nie, D., Li, G., Puybareau, E., Dolz, J., Zhang, Q., Wang, F., Xia, J., Wu, Z., Chen, J., Thung, K-H., Bui, T. D., Shin, J., Zeng, G., Zheng, G., Fonov, V. S., Doyle, A., Xu, Y., Moeskops, P., Pluim, J. P. W. & 9 others, Desrosiers, C., Ayed, I. B., Sanroma, G., Benkarim, O. M., Casamitjana, A., Vilaplana, V., Lin, W., Li, G. & Shen, D., 27 Feb 2019, In : IEEE Transactions on Medical Imaging. 38, 9, p. 2219-2230 12 p., 2901712.

Research output: Contribution to journalArticleAcademicpeer-review

18 Citations (Scopus)
1 Downloads (Pure)

Blood pressure variability and microvascular dysfunction: The Maastricht Study

Rensma, S., Zhou, T., van der Heide, F., Henry, R., Kroon, A., Jansen, J., Backes, W., Berendschot, T., Eussen, S., Dagnelie, P., Webers, C., Schram, M., Schalkwijk, C., van Sloten, T. & Stehouwer, C., 1 Sep 2019, In : Diabetologia. 62, Suppl 1, p. S491-S492 1012.

Research output: Contribution to journalMeeting AbstractAcademic

Carotid stiffness is associated with retinal microvascular dysfunction: the Maastricht study

Zhou, T., van der Heide, F. C. T., Henry, R. M. A., Houben, A. J. H., Kroon, A. A., van der Kallen, C. J. H., Dagnelie, P. C., Eussen, S. J. P., Berendschot, T. T. J., Schouten, J. S. A., Schram, M. T., van Greevenbroek, M. M. J., Wesselius, A., Reesink, K. D. & Stehouwer, C. D. A., Sep 2019, In : Diabetologia. 62, Supp. 1, p. S501-S501 1032.

Research output: Contribution to journalMeeting AbstractAcademic

Cats or CAT scans: transfer learning from natural or medical image source data sets?

Cheplygina, V., Mar 2019, In : Current Opinion in Biomedical Engineering. 9, p. 21-27 7 p.

Research output: Contribution to journalReview articleAcademicpeer-review

Open Access
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4 Citations (Scopus)
36 Downloads (Pure)

Characteristics of the retinal microvasculature in association with cardiovascular risk markers in children with overweight, obesity and morbid obesity

Berendschot, T. T. J. M., Rijks, J., Vreugdenhil, A., Dorenbos, E., Karnebeek, K., Joris, P., Mensink, R. & Plat, J., 2019, In : Journal of Vascular Research. 56, S1, p. 13-13

Research output: Contribution to journalMeeting AbstractAcademic

Open Access

Comparing signal-to-noise ratio for prostate imaging at 7T and 3T

Steensma, B. R., Luttje, M., Voogt, I. J., Klomp, D. W. J., Luijten, P. R., van den Berg, C. A. T. & Raaijmakers, A. J. E., May 2019, In : Journal of Magnetic Resonance Imaging. 49, 5, p. 1446-1455 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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4 Citations (Scopus)
42 Downloads (Pure)

Confocal Raman spectroscopy: Evaluation of a non-invasive technique for the detection of topically applied ketorolac tromethamine in vitro and in vivo

Bertens, C. J. F., Zhang, S., Erckens, R. J., van den Biggelaar, F. J. H. M., Berendschot, T. T. J. M., Webers, C. A. B., Nuijts, R. M. M. A. & Gijs, M., 30 Oct 2019, In : International Journal of Pharmaceutics. 570, 9 p., 118641.

Research output: Contribution to journalArticleAcademicpeer-review

3 Citations (Scopus)

Convolutional neural network-based regression for quantification of brain characteristics using MRI

Fernandes, J., Alves, V., Khalili, N., Benders, M. J. N. L., Išgum, I., Pluim, J. & Moeskops, P., 30 Mar 2019, New Knowledge in Information Systems and Technologies. Reis, L. P., Costanzo, S., Adeli, H. & Rocha, Á. (eds.). Berlin: Springer, Vol. 2. p. 577-586 10 p. (Advances in Intelligent Systems and Computing; vol. 931).

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

1 Downloads (Pure)

Convolutional neural networks for segmentation of the left atrium from gadolinium-enhancement MRI images

de Vente, C., Veta, M., Razeghi, O., Niederer, S., Pluim, J., Rhode, K. & Karim, R., 14 Feb 2019, Statistical Atlases and Computational Models of the Heart. Atrial Segmentation and LV Quantification Challenges - 9th International Workshop, STACOM 2018, Held in Conjunction with MICCAI 2018, Revised Selected Papers. McLeod, K., Mansi, T., Young, A., Rhode, K., Zhao, J., Li, S., Pop, M. & Sermesant, M. (eds.). Cham: Springer, p. 348-356 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11395 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

1 Citation (Scopus)
4 Downloads (Pure)

Correcting time-intensity curves in dynamic contrast-enhanced breast MRI for inhomogeneous excitation fields at 7T

van Rijssel, M. J., Pluim, J. P. W., Chan, H-S. M., van den Wildenberg, L., Schmitz, A. M. T., Luijten, P. R., Gilhuijs, K. G. A. & Klomp, D. W. J., 27 Dec 2019, In : Magnetic Resonance in Medicine. 84, 2, p. 1000-1010 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

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Correction: Automatic emphysema detection using weakly labeled HRCT lung images (PLoS ONE (2018) 13:10 (e0205397) DOI: 10.1371/journal.pone.0205397)

Pena, I. P., Cheplygina, V., Paschaloudi, S., Vuust, M., Carl, J., Weinreich, U. M., Ostergaard, L. R. & de Bruijne, M., 1 Aug 2019, In : PLoS ONE. 14, 8, 1 p., e0220873.

Research output: Contribution to journalComment/Letter to the editorAcademicpeer-review

Open Access
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Cross-scanner and cross-protocol harmonisation of multi-shell diffusion MRI data: open challenge and evaluation results

Ning, L., Bonet-Carne, E., Grussu, F., Sepehrband, F., Kaden, E., Veraart, J., Blumberg, S. B., Khoo, C. S., Palombo, M., Coll-Font, J., Scherrer, B., Warfield, S. K., Karayumak, S. C., Rathi, Y., Koppers, S., Weninger, L., Ebert, J., Merhof, D., Moyer, D., Pietsch, M. & 11 others, Christiaens, D., Teixeira, R., Tournier, J-D., Zhylka, A., Pluim, J., Parker, G., Rudrapatna, U., Evans, J., Charron, C., Jones, D. K. & Tax, C. W. M., 2019. 4 p.

Research output: Contribution to conferenceAbstractAcademic

Open Access