Department of Biomedical Engineering

Research Output 1962 2019

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Article
2018

Quantifying joint stiffness in clubfoot patients

van der Steen, M. C., Andrei, P. A., van Rietbergen, B., Ito, K. & Besselaar, A. T., 1 Dec 2018, In : Clinical Biomechanics. 60, p. 185-190 6 p.

Research output: Contribution to journalArticleAcademicpeer-review

Clubfoot
Joints
Torque
Subtalar Joint
Ankle Joint
1 Citation (Scopus)

Quantitative analysis of patellar tendon abnormality in asymptomatic professional "Pallapugno" players: a texture-based ultrasound approach

Meiburger, K. M., Salvi, M., Giacchino, M., Acharya, U. R., Minetto, M. A., Caresio, C. & Molinari, F., 25 Apr 2018, In : Applied Sciences. 8, 5, 13 p., 660

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
tendons
Tendons
abnormalities
quantitative analysis
textures
7 Citations (Scopus)

Quaternary structure influences the peroxidase activity of peroxiredoxin 3

Yewdall, N. A., Peskin, A. V., Hampton, M. B., Goldstone, D. C., Pearce, F. G. & Gerrard, J. A., 4 Mar 2018, In : Biochemical and Biophysical Research Communications. 497, 2, p. 558-563 6 p.

Research output: Contribution to journalArticleAcademicpeer-review

Peroxiredoxin III
Dimers
Peroxidase
Peroxiredoxins
Self assembly
1 Citation (Scopus)

Radiopaque UHMWPE sublaminar cables for spinal deformity correction: preclinical mechanical and radiopacifier leaching assessment

Roth, A. K., Boon-Ceelen, K., Smelt, H., van Rietbergen, B., Willems, P. C., van Rhijn, L. W. & Arts, J. J., Feb 2018, In : Journal of Biomedical Materials Research, Part B: Applied Biomaterials. 106, 2, p. 771-779 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Ultrahigh molecular weight polyethylenes
Leaching
Cables
Bismuth
Mechanical properties
3 Citations (Scopus)

Rational design, binding studies and crystal structure evaluation of the first ligand targeting the dimerization Interface of the 14-3-3ζ adapter protein

Ehlers, M., Grad, J. N., Mittal, S., Bier, D., Mertel, M., Ohl, L., Bartel, M., Briels, J., Heimann, M., Ottmann, C., Sanchez-Garcia, E., Hoffmann, D. & Schmuck, C., 16 Mar 2018, In : ChemBioChem. 19, 6, p. 591-595

Research output: Contribution to journalArticleAcademicpeer-review

14-3-3 Proteins
Dimerization
Crystal structure
Thermophoresis
Ligands
4 Citations (Scopus)

Rationally designed semisynthetic natural product analogues for stabilization of 14-3-3 protein–protein interactions

Andrei, S. A., de Vink, P., Sijbesma, E., Han, L., Brunsveld, L., Kato, N., Ottmann, C. & Higuchi, Y., 8 Oct 2018, In : Angewandte Chemie - International Edition. 57, 41, p. 13470-13474

Research output: Contribution to journalArticleAcademicpeer-review

14-3-3 Proteins
Biological Products
Stabilization
Proteins
Molecular dynamics

Reconnection of interrupted curvilinear structures via cortically inspired completion for ophthalmologic images

Zhang, J., Bekkers, E., Chen, D., Berendschot, T. T. J. M., Schouten, J., Pluim, J. P. W., Shi, Y., Dashtbozorg, B. & Romeny, B. M. T. H., 1 May 2018, In : IEEE Transactions on Biomedical Engineering. 65, 5, p. 1151-1165 15 p.

Research output: Contribution to journalArticleAcademicpeer-review

Convolution

Recovery of absolute coronary flow and resistance one week after percutaneous coronary intervention of a chronic totally occluded coronary artery using the novel RayFlow© infusion catheter

Keulards, D. C. J., Zimmermann, F. M., Pijls, N. H. J. & Teeuwen, K., 3 Aug 2018, In : EuroIntervention. 14, 5, p. e588-e589 2 p.

Research output: Contribution to journalArticleAcademicpeer-review

Reference values for anterior chamber morphometrics with swept-source optical coherence tomography in a Caucasian population

Romkens, H. C. S., Beckers, H. J. M., Schouten, J. S. A. G., Berendschot, T. T. J. M. & Webers, C. A. B., 2018, In : Clinical Ophthalmology. 12, p. 411-417

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
16 Citations (Scopus)

Regulation of cell cycle progression by cell-cell and cell-matrix forces

Uroz, M., Wistorf, S., Serra-Picamal, X., Conte, V., Sales-Pardo, M., Roca-Cusachs, P., Guimerà, R. & Trepat, X., 1 Jun 2018, In : Nature Cell Biology. 20, 6, p. 646-654 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Cell Cycle
Extracellular Matrix
Optogenetics
G2 Phase
Traction
3 Citations (Scopus)

Reliability of HR-pQCT derived cortical bone structural parameters when using uncorrected instead of corrected automatically generated endocortical contours in a cross-sectional study: the Maastricht study

de Waard, E. A. C., Sarodnik, C., Pennings, A., de Jong, J. J. A., Savelberg, H. H. C. M., van Geel, T. A., van der Kallen, C. J., Stehouwer, C. D. A., Schram, M. T., Schaper, N., Dagnelie, P. C., Geusens, P. P. M. M., Koster, A., van Rietbergen, B. & van den Bergh, J. P. W., 1 Sep 2018, In : Calcified Tissue International. 103, 3, p. 252-265 14 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Tibia
Cross-Sectional Studies
Porosity
Cortical Bone
5 Citations (Scopus)

Retinal artery/vein classification using genetic-search feature selection

Huang, F., Dashtbozorg, B., Tan, T. & ter Haar Romeny, B. M., 1 Jul 2018, In : Computer Methods and Programs in Biomedicine. 161, p. 197-207 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Retinal Artery
Retinal Vein
Feature extraction
Veins
Arteries
7 Citations (Scopus)

Retinal microaneurysms detection using local convergence index features

Dashtbozorg, B., Zhang, J., Huang, F. & ter Haar Romeny, B. M., 12 Mar 2018, In : IEEE Transactions on Image Processing. 27, 7, p. 3300-3315 16 p.

Research output: Contribution to journalArticleAcademicpeer-review

Image resolution
Classifiers
Sampling
File
Image analysis
Neural networks
Convolution
Electron microscopy
Imaging techniques
3 Citations (Scopus)

Segmentation of the left ventricle in cardiac MRI using a hierarchical extreme learning machine model

Luo, Y., Yang, B., Xu, L., Hao, L., Liu, J., Yao, Y. & Vosse, F. V. D., 1 Oct 2018, In : International Journal of Machine Learning and Cybernetics. 9, 10, p. 1741-1751 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Magnetic resonance
Learning systems
Imaging techniques
Testing
Costs

Selection strategies for atlas-based mosaicing of left atrial 3-D transesophageal echocardiography data

Mulder, H. W., van Stralen, M., Ren, B., Haak, A., van Burken, G., Viergever, M. A., Bosch, J. G. & Pluim, J. P. W., Jul 2018, In : Ultrasound in Medicine and Biology. 44, 7, p. 1533–1543

Research output: Contribution to journalArticleAcademicpeer-review

Three-Dimensional Echocardiography
echocardiography
Atlases
Transesophageal Echocardiography
Heart Atria
1 Citation (Scopus)

Self-assembly and stabilization of hybrid cowpea chlorotic mottle virus particles under nearly physiological conditions

Timmermans, S. B. P. E., Vervoort, D. F. M., Schoonen, L., Nolte, R. J. M. & van Hest, J. C. M., 1 Nov 2018, In : Chemistry - An Asian Journal. 13, 22, p. 3518-3525

Research output: Contribution to journalArticleAcademicpeer-review

Viruses
Self assembly
Stabilization
Elastin
Capsid Proteins
3 Citations (Scopus)

Self-assembly of toroidal proteins explored using native mass spectrometry

Yewdall, N. A., Allison, T. M., Pearce, F. G., Robinson, C. V. & Gerrard, J. A., 1 Jan 2018, In : Chemical Science. 9, 28, p. 6099-6106 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Peroxiredoxins
Self assembly
Mass spectrometry
Nanotechnology
Proteins
9 Citations (Scopus)

Self-healing biomaterials: from molecular concepts to clinical applications

Diba, M., Spaans, S., Ning, K., Ippel, B. D., Yang, F., Loomans, B., Dankers, P. Y. W. & Leeuwenburgh, S. C. G., 7 Sep 2018, In : Advanced Materials Interfaces. 5, 17, 21 p., 1800118

Research output: Contribution to journalArticleAcademicpeer-review

Biomaterials
Self-healing materials
Dental materials
Bone cement
Orthopedics
5 Citations (Scopus)

Severe retinopathy of prematurity is associated with reduced cerebellar and brainstem volumes at term and neurodevelopmental deficits at two years

Drost, F. J., Keunen, K., Moeskops, P., Claessens, N. H. P., van Kalken, F., Išgum, I., Voskuil-Kerkhof, E. S. M., Groenendaal, F., de Vries, L. S., Benders, M. J. N. L. & Termote, J. U. M., 7 Feb 2018, In : Pediatric Research. 83, p. 818–824

Research output: Contribution to journalArticleAcademicpeer-review

Retinopathy of Prematurity
Brain Stem
Gestational Age
Extremely Premature Infants
Birth Injuries
1 Citation (Scopus)

Sex differences in adenosine-free coronary pressure indexes: a CONTRAST substudy

CONTRAST Study Investigators, 13 Aug 2018, In : JACC: Cardiovascular Interventions. 11, 15, p. 1454-1463 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Sex Characteristics
Adenosine
Pressure
Hyperemia
ROC Curve
1 Citation (Scopus)

Shear stress induces expression, intracellular reorganization and enhanced Notch activation potential of Jagged1

Driessen, R. C. H., Stassen, O. M. J. A., Sjöqvist, M., Suarez Rodriguez, F., Grolleman, J., Bouten, C. V. C. & Sahlgren, C. M., 1 Nov 2018, In : Integrative Biology. 10, 11, p. 719-726 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Endothelial cells
Shear stress
Endothelial Cells
Chemical activation
Cluster Analysis

Sheep-specific immunohistochemical panel for the evaluation of regenerative and inflammatory processes in tissue-engineered heart valves

Dekker, S., van Geemen, D., van den Bogaerdt, A. J., Driessen-Mol, A., Aikawa, E. & Smits, A. I. P. M., 15 Aug 2018, In : Frontiers in Cardiovascular Medicine. 5, 19 p., 105

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Heart Valves
Sheep
Extracellular Matrix
Translational Medical Research
Antibodies
2 Citations (Scopus)

Sigma factor-mediated tuning of bacterial cell-free synthetic genetic oscillators

Yelleswarapu, M., van der Linden, A. J., Pieters, P. A., Dubuc, E., de Greef, T. F. A. & Huck, W. T. S., 8 Nov 2018, In : ACS Synthetic Biology. 7, 12, p. 2879-2887

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Artificial Cells
Sigma Factor
Escherichia coli
Tuning
Microfluidics
2 Citations (Scopus)

Simultaneous arteriole and venule segmentation with domain-specific loss function on a new public database

Xu, X., Wang, R., Lv, P., Gao, B., Li, C., Tian, Z., Tan, T. & Xu, F., 1 Jul 2018, In : Biomedical Optics Express. 9, 7, p. 3153-3166 14 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
arterioles
Venules
Arterioles
eye diseases
Databases
8 Citations (Scopus)

Single-cell analysis reveals that stochasticity and paracrine signaling control interferon-alpha production by plasmacytoid dendritic cells

Wimmers, F., Subedi, N., van Buuringen, N., Heister, D., Vivié, J., Beeren-Reinieren, I., Woestenenk, R., Dolstra, H., Piruska, A., Jacobs, J. F. M., van Oudenaarden, A., Figdor, C. G., Huck, W. T. S., de Vries, I. J. M. & Tel, J., 1 Dec 2018, In : Nature Communications. 9, 1, 12 p., 3317

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Paracrine Communication
interferon
Single-Cell Analysis
Interferon Type I
Interferon-alpha
1 Citation (Scopus)

Single dose of empagliflozin increases in vivo cardiac energy status in diabetic db/db mice

Abdurrachim, D., Manders, E., Nicolay, K., Mayoux, E. & Prompers, J. J., 1 Dec 2018, In : Cardiovascular Research. 114, 14, p. 1843-1844 2 p.

Research output: Contribution to journalArticleAcademicpeer-review

Phosphocreatine
Ketones
Risk Reduction Behavior
Adenosine Triphosphate
Sodium-Glucose Transporter 2
7 Citations (Scopus)

Spatially resolved sensitivity of single-particle plasmon sensors

Beuwer, M. A., van Hoof, B. & Zijlstra, P., 1 Mar 2018, In : Journal of Physical Chemistry C. 122, 8, p. 4615-4621 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Nanospheres
sensitivity
shift
sensors
Sensors
1 Citation (Scopus)

Spatial patterning of the Notch ligand Dll4 controls endothelial sprouting in vitro

Tiemeijer, L. A., Frimat, J. P., Stassen, O. M. J. A., Bouten, C. V. C. & Sahlgren, C. M., 23 Apr 2018, In : Scientific Reports. 8, 1, 10 p., 6392

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Ligands
Endothelial Cells
Printing
Microfluidics
Surface Properties
4 Citations (Scopus)

Statins promote cardiac infarct healing by modulating endothelial barrier function revealed by contrast-enhanced magnetic resonance imaging

Leenders, G. J., Smeets, M. B., Van Den Boomen, M., Berben, M., Nabben, M., Van Strijp, D., Strijkers, G. J., Prompers, J. J., Arslan, F., Nicolay, K. & Vandoorne, K., 1 Jan 2018, In : Arteriosclerosis, Thrombosis, and Vascular Biology. 38, 1, p. 186-194 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Hydroxymethylglutaryl-CoA Reductase Inhibitors
Apolipoproteins E
Magnetic Resonance Imaging
Myocardial Infarction
Permeability
2 Citations (Scopus)

Strain mediated enzymatic degradation of arterial tissue: Insights into the role of the non-collagenous tissue matrix and collagen crimp

Gaul, R. T., Nolan, D. R., Ristori, T., Bouten, C. V. C., Loerakker, S. & Lally, C., 1 Sep 2018, In : Acta Biomaterialia. 77, p. 301-310

Research output: Contribution to journalArticleAcademicpeer-review

Collagen
Tissue
Degradation
Fibers
Bearings (structural)
1 Citation (Scopus)

Strain-stiffening in dynamic supramolecular fiber networks

Fernández-Castaño Romera, M., Lou, X., Schill, J., ter Huurne, G., Fransen, P. P. K. H., Voets, I. K., Storm, C. & Sijbesma, R. P., 19 Dec 2018, In : Journal of the American Chemical Society. 140, 50, p. 17547-17555 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Hydrogels
Stress Fibers
Sonication
Fibers
Rheology
2 Citations (Scopus)

Structural characterization of 14-3-3ζ in complex with the human Son of sevenless homolog 1 (SOS1)

Ballone, A., Centorrino, F., Wolter, M. & Ottmann, C., 1 Jun 2018, In : Journal of Structural Biology. 202, 3, p. 210-215

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
SOS1 Protein
Proteins
14-3-3 Proteins
Cell Differentiation
Cell Proliferation

Structural damage and inflammation on radiographs or magnetic resonance imaging are associated with cortical interruptions on high-resolution peripheral quantitative computed tomography: a study in finger joints of patients with rheumatoid arthritis and healthy subjects

Scharmga, A., Geusens, P. P. M. M., Peters, M., van den Bergh, J. P. W., Loeffen, D., Schoonbrood, T., van Rietbergen, B., Vosse, D., Weijers, R. A. M. & van Tubergen, A., 2018, In : Scandinavian Journal of Rheumatology. 47, 6, p. 431-439 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Finger Joint
Rheumatoid Arthritis
Healthy Volunteers
Tomography
Magnetic Resonance Imaging

Substrate fiber alignment mediates tendon cell response to inflammatory signaling

Schoenenberger, A. D., Foolen, J., Moor, P., Silvan, U. & Snedeker, J. G., 15 Apr 2018, In : Acta Biomaterialia. 71, p. 306-317 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Tendons
Fibers
Substrates
Fibroblasts
Biocompatible Materials
1 Citation (Scopus)

Sumoylation of Notch1 represses its target gene expression during cell stress

Antila, C. J. M., Rraklli, V., Blomster, H. A., Dahlström, K. M., Salminen, T. A., Holmberg, J., Sistonen, L. & Sahlgren, C. M., 5 Jan 2018, In : Cell Death and Differentiation. 25, p. 600-615 16 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Sumoylation
Gene Expression
Notch Receptors
Histone Deacetylases
Post Translational Protein Processing

Supervised exercise therapy for intermittent claudication is increasingly endorsed by Dutch vascular surgeons

Hageman, D., Lauret, G. J., Gommans, L. N. M., Koelemay, M. J. W., van Sambeek, M. R. H. M., Scheltinga, M. R. M. & Teijink, J. A. W., 1 Feb 2018, In : Annals of Vascular Surgery. 47, p. 149-156 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

Exercise Therapy
Intermittent Claudication
Blood Vessels
Health Insurance
Surgeons
18 Citations (Scopus)

Supramolecular block copolymers under thermodynamic control

Adelizzi, B., Aloi, A., Markvoort, A. J., ten Eikelder, H. M. M., Voets, I. K., Palmans, A. R. A. & Meijer, E. W., 18 May 2018, In : Journal of the American Chemical Society. 140, 23, p. 7168-7175

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Hydrogen Bonding
Thermodynamics
Block copolymers
Microscopy
Polymers
8 Citations (Scopus)

Supramolecular copolymerization as a strategy to control the stability of self-assembled nanofibers

Thota, B. N. S., Lou, X., Bochicchio, D., Paffen, T. F. E., Lafleur, R. P. M., van Dongen, J. L. J., Ehrmann, S., Haag, R., Pavan, G. M., Palmans, A. R. A. & Meijer, E. W., 4 Jun 2018, In : Angewandte Chemie - International Edition. 57, 23, p. 6843-6847

Research output: Contribution to journalArticleAcademicpeer-review

Nanofibers
Copolymerization
Polymers
Copolymers
Monomers
24 Citations (Scopus)

Switching from infliximab innovator to biosimilar in patients with inflammatory bowel disease: A 12-month multicentre observational prospective cohort study

Schmitz, E. M. H., Boekema, P. J., Straathof, J. W. A., van Renswouw, D. C., Brunsveld, L., Scharnhorst, V., van de Poll, M. E. C., Broeren, M. A. C. & Derijks, L. J. J., 1 Feb 2018, In : Alimentary Pharmacology and Therapeutics. 47, 3, p. 356-363

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Biosimilar Pharmaceuticals
Cohort Studies
Prospective Studies
Inflammatory Bowel Diseases
Infliximab
7 Citations (Scopus)
Open Access
File
Perylene
Lipid bilayers
Fluorescent Dyes
Surface-Active Agents
Self assembly
2 Citations (Scopus)

Target of rapamycin FATC domain as a general membrane anchor: the FKBP-12 like domain of FKBP38 as a case study

De Cicco, M., Milroy, L. G. & Dames, S. A., 1 Feb 2018, In : Protein Science. 27, 2, p. 546-560 15 p.

Research output: Contribution to journalArticleAcademicpeer-review

Tacrolimus Binding Protein 1A
Sirolimus
Anchors
Membranes
Proteins
2 Citations (Scopus)

Temperature-induced collapse of elastin-like peptides studied by 2DIR spectroscopy

Selig, O., da Cunha, A. M. D. C. V., van Eldijk, M. B., van Hest, J. C. M., Jansen, T. L. C., Bakker, H. J. & Rezus, Y. L. A., 1 Aug 2018, In : Journal of Physical Chemistry B. 122, 34, p. 8243-8254 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
elastin
Elastin
Peptides
peptides
Spectroscopy
3 Citations (Scopus)

Template matching via densities on the roto-translation group

Bekkers, E., Loog, M., Romeny, B. T. H. & Duits, R., 2018, In : IEEE Transactions on Pattern Analysis and Machine Intelligence. 40, 2, p. 452-466 15 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Template matching
Template Matching
Splines
Lie groups
Geometry
3 Citations (Scopus)

The association between diabetes status, HbA1c, diabetes duration, microvascular disease, and bone quality of the distal radius and tibia as measured with high-resolution peripheral quantitative computed tomographyThe Maastricht Study

de Waard, E. A. C., de Jong, J. J. A., Koster, A., Savelberg, H. H. C. M., van Geel, T. A., Houben, A. J. H. M., Schram, M. T., Dagnelie, P. C., van der Kallen, C. J., Sep, S. J. S., Stehouwer, C. D. A., Schaper, N. C., Berendschot, T. T. J. M., Schouten, J. S. A. G., Geusens, P. P. M. M. & van den Bergh, J. P. W., Dec 2018, In : Osteoporosis International. 29, 12, p. 2725-2738 14 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Stress Fibers
Vimentin
Knockout Mice
Fibroblasts
Focal Adhesions

The virtual physiological human conference 2016

Hoekstra, A. G., van de Vosse, F. & Röhrle, O., 1 Jan 2018, In : Journal of Computational Science. 24, p. 65-67 3 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
7 Citations (Scopus)

Tissue alignment enhances remodeling potential of tendon-derived cells - lessons from a novel microtissue model of tendon scarring

Foolen, J., Wunderli, S. L., Loerakker, S. & Snedeker, J. G., Jan 2018, In : Matrix Biology. 65, p. 14-29 16 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Tendons
Cicatrix
Tendinopathy
Extracellular Matrix
Matrix Metalloproteinases
Tissue Engineering
Regeneration
Age Factors
Cicatrix
Comorbidity

Toward complete oral cavity cancer resection using a handheld diffuse reflectance spectroscopy probe

Brouwer de Koning, S. G., Baltussen, E. J. M., Karakullukcu, M. B., Dashtbozorg, B., Smit, L. A., Dirven, R., Hendriks, B. H. W., Sterenborg, H. J. C. M. & Ruers, T. J. M., 1 Dec 2018, In : Journal of Biomedical Optics. 23, 12, 8 p., 121611

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
cancer
Spectroscopy
Tissue
Tumors
reflectance