Department of Biomedical Engineering

Research Output

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2020

Peroxiredoxin proteins as building blocks for nanotechnology

Conroy, F. & Yewdall, A., 2020, Protein Nanotechnology. Gerard, J. & Domigan, L. (eds.). Humana: Springer, p. 39-54 16 p. (Methods in Molecular Biology; vol. 2073).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

2019

Biomechanics and modeling of tissue-engineered heart valves

Ristori, T., van Kelle, A. J. M., Baaijens, F. & Loerakker, S., 9 Apr 2019, Advances in heart valve biomechanics: valvular physiology, mechanobiology, and bioengineering. Sacks, M. & Liao, J. (eds.). Cham: Springer, p. 413-446 34 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

6 Downloads (Pure)

Deep learning with convolutional neural networks for histopathology image analysis

Bosnacki, D., van Riel, N. A. W. & Veta, M., 2019, Automated reasoning for systems biology and medicine. Lio, P. & Zuliani, P. (eds.). Springer, p. 453-469 (Computational Biology Series; vol. 30).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Elastin in vascular grafts

Wang, R., de Kort, B., Smits, A. & Weiss, A., 27 Aug 2019, Tissue-Engineered Vascular Grafts. Walpoth, B., Bergmeister, H., Bowlin, G., Kong, D., Rotmans, J. & Zilla, P. (eds.). Cham: Springer Nature Switzerland AG, p. 1-32 (Reference Series in Biomedical Engineering ).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

1 Downloads (Pure)

Molecular recognition of proteins by cucurbiturils

de Vink, P. J. & Brunsveld, L., 5 Nov 2019, Cucurbiturils and Related Macrocycles. Kim, K. (ed.). London: Royal Society of Chemistry, p. 464-482 19 p. (Monographs in Supramolecular Chemistry; no. 28).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

1 Downloads (Pure)

Tissue-engineered heart valves

Mela, P., Hinderer, S., Kandail, H. S., Bouten, C. & Smits, A., Sep 2019, Principles of Heart Valve Tissue Engineering. Kheradvar, A. (ed.). Amsterdam: Elsevier, p. 124-176 54 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

3 Downloads (Pure)

Vascular biomarkers for diabetes and diabetic retinopathy screening

Huang, F., Abbasi-Sureshjani, S., Zhang, J., Bekkers, E. J., Dasht Bozorg, B. & ter Haar Romeny, B. M., 22 Nov 2019, Computational Retinal Image Analysis: Tools, Applications and Perspectives. Trucco, E., MacGillivray, T. & Xu, Y. (eds.). Academic Press Inc., p. 319-352 34 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Vascular tissue engineering: pathological considerations, mechanisms, and translational implications

Schoen, F., Fioretta, E. S., Mallone, A., Smits, A. I. P. M., Klouda, E. L. L. & Bouten, C. V. C., 26 Oct 2019, Tissue-Engineered Vascular Grafts. Walpoth, B., Bergmeister, H., Bowlin, G., Kong, D., Rotmans, J. & Zilla, P. (eds.). Cham, Switzerland: Springer Nature Switzerland AG, p. 1-41 (Reference serie in Biomedical Engineering).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

1 Downloads (Pure)
2018

Cucurbit[n]uril assemblies for biomolecular applications

Cavatorta, E., Brunsveld, L., Huskens, J. & Jonkheijm, P., 2018, Multivalency : Concepts, Research and Applications. Huskens, J., Prins, L. J., Haag, R. & Ravoo, B. J. (eds.). New York: Wiley-IEEE, p. 291-324

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

1 Downloads (Pure)

Mechanical properties of bioactive glasses

van Gestel, N. A. P., Gabriels, F., van Rietbergen, B., Arts, J. J. C. & Hofmann, S., 2018, Bioactive glasses: materials, properties and applications. Ylänen, H. (ed.). 2nd ed. Kidlington: Woodhead, p. 87-102 (Woodhead publishing series in biomaterials).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

3 Downloads (Pure)

Metal ion-induced self-assembly and packaging of CCMV nanocapsules

Schoonen, L., van Eldijk, M. B. & van Hest, J. C. M., 5 Jun 2018, Protein scaffolds: design, synthesis, and applications. Udit, A. K. (ed.). Dordrecht: Springer, p. 57-67 11 p. (Methods in Molecular Biology; vol. 1798).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

1 Citation (Scopus)

Modification of CCMV nanocages for enzyme encapsulation

Schoonen, L. & van Hest, J. C. M., 5 Jun 2018, Protein Scaffolds : Design, Synthesis, and Applications. Udit, A. K. (ed.). Dordrecht: Springer, p. 69-83 15 p. (Methods in Molecular Biology; vol. 1798).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

1 Citation (Scopus)

Residue-specific incorporation of noncanonical amino acids for protein engineering

van Eldijk, M. B. & van Hest, J. C. M., 2018, Noncanonical amino acids: methods and protocols. Lemke, E. A. (ed.). New York: Humana Press, p. 137-145 9 p. (Methods in Molecular Biology; vol. 1728).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

1 Citation (Scopus)
2017

Automatic atlas-based segmentation of brain white matter in neonates at risk for neurodevelopmental disorders

Neto Fonseca, L. T., van Pul, C., Lori, N. F., van den Boom, R., Andriessen, P., Buijs, J. & Vilanova Bartroli, A., Jan 2017, Modeling, analysis, and visualization of anisotropy. Schultz, T., Özarslan, E. & Hotz, I. (eds.). 9783319613574 ed. Cham: Springer, p. 355-372 18 p. (Mathematics and Visualization).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

1 Citation (Scopus)

DNA-specific biosensors based on intramolecular β-lactamase-inhibitor complex formation

Engelen, W. & Merkx, M., 1 Jan 2017, Synthetic protein switches. Stein, V. (ed.). New York: Humana Press, p. 179-194 16 p. (Methods in Molecular Biology; vol. 1596).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

1 Citation (Scopus)

Porous scaffolds using dual electrospinning for in situ cardiovascular tissue engineering

Thakkar, S., Driessen-Mol, A., Baaijens, F. & Bouten, C., 1 Jan 2017, Handbook of Intelligent Scaffolds for Tissue Engineering and Regenerative Medicine, 2nd Edition. Singapore: Pan Stanford Publishing Pte. Ltd., p. 441-478 38 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Protein scaffolds and higher-order complexes in synthetic biology

den Hamer, A., Rosier, B. J. H. M., Brunsveld, L. & de Greef, T. F. A., 29 Nov 2017, Synthetic Biology : Volume 2. Ryadnov, M., Brunsveld, L. & Suga, H. (eds.). Cambridge: Royal Society of Chemistry, p. 65-96

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

3 Downloads (Pure)

Skin mechanics

Oomens, C. W. J., van Vijven, M. & Peters, G. W. M., 1 Jan 2017, Biomechanics of Living Organs: Hyperelastic Constitutive Laws for Finite Element Modeling. Payan, Y. & Ohayon, J. (eds.). Amsterdam: Elsevier, p. 347-357 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

3 Citations (Scopus)
3 Downloads (Pure)
2016

Mechanical modeling of skin

Oomens, C. W. J. & Peters, G. W. M., 1 Jan 2016, Structure-Based Mechanics of Tissues and Organs. Kassab, G. S. & Sacks, M. S. (eds.). New York: Springer, p. 317-327 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

5 Downloads (Pure)

Nanosized delivery systems for tissue regeneration

Cinar, G., Mumcuoglu, D., Tekinay, A. B. & Guler, M. O., 16 Mar 2016, Therapeutic Nanomaterials: Guler/Therapeutic Nanomaterials. Guler, M. O. & Tekinay, A. B. (eds.). Wiley, p. 7-31

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

New compound classes: Protein–protein interactions

Ottmann, C., 1 Apr 2016, Handbook of Experimental Pharmacology. Nielsch, U., Fuhrmann, U. & Jaroch, S. (eds.). Berlin: Springer, Vol. 232. p. 125-138 14 p. (Handbook of experimental pharmacology; vol. 232).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

2 Citations (Scopus)
5 Downloads (Pure)

S53P4 bioactive glass

Hulsen, D. J. W., van Gestel, N. A. P., Geurts, J. A. P. & Arts, J. J. C., 7 Nov 2016, Management of Periprosthetic Joint Infections (PJIs). Arts, C. & Geurts, J. (eds.). s.l.: Woodhead, p. 69-81

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

2 Citations (Scopus)
3 Downloads (Pure)
2015

Biologically-inspired supervised vasculature segmentation in SLO retinal fundus images

Abbasi-Sureshjani, S., Smit-Ockeloen, I. M., Zhang, J. & ter Haar Romenij, B. M., 4 Jul 2015, Image Analysis and Recognition: 12th International Conference, ICIAR 2015, Niagara Falls, ON, Canada, July 22-24, 2015, Proceedings. Berlin: Springer, p. 325-334 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

16 Citations (Scopus)
1 Downloads (Pure)

Bottom-up (pressure shear) injuries

Stechmiller, J. K., Cowan, L. J. & Oomens, C. W. J., 15 Jul 2015, Wound, Ostomy and Continence Nurses Society™ Core Curriculum: Wound Management. Doughty, D. B. & McNichol, L. L. (eds.). Alphen aan de Rijn: Wolters Kluwer Health Adis (ESP)

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Contextual diffusion image post-processing aids clinical applications

Prckovska, V., Andorrà, M., Villoslada, P., Martinez-Heras, E., Duits, R., Fortin, D., Rodrigues, P. & Descoteaux, M., 2015, Visualization and Processing of Higher Order Descriptors for Multi-Valued Data. Hotz, I. & Schultz, T. (eds.). Cham: Springer, p. 353-377 383 p. (Mathematics and Visualization).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

4 Citations (Scopus)
2 Downloads (Pure)

Direction-controlled DTI interpolation

Florack, L. M. J., Dela Haije, T. C. J. & Fuster, A., 2015, Visualization and Processing of Higher Order Descriptors for Multi-Valued Data. Hotz, I. & Schultz, T. (eds.). Cham: Springer, p. 149-162 383 p. (Mathematics and Visualization).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

6 Downloads (Pure)

Finslerian diffusion and the Bloch–Torrey equation

Dela Haije, T. C. J., Fuster, A. & Florack, L. M. J., 2015, Visualization and Processing of Higher Order Descriptors for Multi-Valued Data. Hotz, I. & Schultz, T. (eds.). Cham: Springer, p. 21-35 383 p. (Mathematics and Visualization).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

3 Downloads (Pure)

How to choose myofiber orientation in a biventricular finite element model?

Pluijmert, M., Prinzen, F., Flores De La Parra, A., Kroon, W., Delhaas, T. & Bovendeerd, P., 2015, Functional Imaging and Modeling of the Heart: 8th International Conference, FIMH 2015, Maastricht, The Netherlands, June 25-27, 2015. Proceedings. van Assen, H., Bovendeerd, P. & Delhaas, T. (eds.). Berlin: Springer, p. 373-381 (Lecture Notes in Computer Science; vol. 9126).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

3 Downloads (Pure)

Magnetic particle actuation in stationary microfluidics for integrated lab-on-chip biosensors

Reenen, van, A., Jong, de, A. M., Toonder, den, J. M. J. & Prins, M. W. J., 2015, Microfluidics for Medical Applications. Berg, van den, A. & Segerink, L. (eds.). Royal Society of Chemistry, p. 102-130 29 p. (RSC Nanoscience & Nanotechnology; vol. 36).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

4 Downloads (Pure)

Molecular MR imaging of atherosclerosis

Moonen, R. P. M., Strijkers, G. J., Fayad, Z. A., Daemen, M. J. A. P. & Nicolay, K., 1 Jan 2015, Cardiovascular Imaging: Arterial and Aortic Valve Inflammation and Calcification. Aikawa, E. (ed.). Cham: Springer, p. 269-296 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

2 Citations (Scopus)
2 Downloads (Pure)

Nanoscale compartmentalization techniques in cascade catalysis

Willemsen, J. S., Rutjes, F. P. J. T. & van Hest, J. C. M., 1 Jan 2015, Enzyme Nanocarriers. Pan Stanford Publishing Pte. Ltd., p. 123-158 36 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

2014

A geometric model for the functional circuits of the visual front-end

ter Haar Romeny, B. M., 2014, Brain-Inspired Computing: International Workshop, BrainComp 2013, Cetraro, Italy, July 8-11, 2013, Revised Selected Papers. Grandinetti, L., Lippert, T. & Petkov, N. (eds.). Cham: Springer, p. 35-50 16 p. (Lecture Notes in Computer Science; vol. 8603).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Cuspless sub-Riemannian geodesics within the Euclidean motion group SE(d)

Duits, R., Ghosh, A., Dela Haije, T. C. J. & Sachkov, Y., 2014, Neuromathematics of Vision. Citti, G. & Sarti, A. (eds.). Berlin: Springer, p. 173-215 (Lecture Notes in Morphogenesis).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Fuzzy fibers: uncertainty in dMRI tractography

Schultz, T., Vilanova, A., Brecheisen, R. & Kindlmann, G., 1 Jan 2014, Scientific visualization: uncertainty, multifield, biomedical, and scalable visualization. Hansen, C. D., Chen, M., Johnson, C. R., Kaufman, A. E. & Hagen, H. (eds.). London: Springer, p. 79-92 14 p. (Mathematics and Visualization).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

5 Citations (Scopus)

Genetically encoded fluorescent probes for Intracellular Zn2+ imaging

Hessels, A. M. & Merkx, M., 2014, Zinc Signals in Cellular Functions and Disorders. Berlin: Springer, p. 135-159

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

2 Citations (Scopus)

Handboek medische laboratoriumdiagnostiek

Scharnhorst, V., 2014, Handboek medische laboratoriumdiagnostiek. Hooijkaas, H., Mohrmann, K., Souverijn, J. H. M., Tax, G. H. M. & Smeets, L. G. (eds.). Houten: Prelium Uitgevers, 1035 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Higher-order tensors in diffusion imaging

Schultz, T., Fuster, A., Ghosh, A., Deriche, R., Florack, L. M. J. & Lim, L. H., 2014, Visualization and Processing of Tensors and Higher Order Descriptors for Multi-Valued Data, Part III. Westin, C-F., Vilanova, A. & Burgeth, B. (eds.). Springer, p. 129-161 (Mathematics and Visualization).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

13 Citations (Scopus)
4 Downloads (Pure)

Metal nanoparticles for microscopy and spectroscopy

Zijlstra, P., Orrit, M. & Koenderink, A. F., 2014, Nanoparticles : Workhorses of Nanoscience. Mello Donegá, de, C. (ed.). Berlin: Springer

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Open Access
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5 Citations (Scopus)
147 Downloads (Pure)

Modular design strategies for protein sensors and switches

Merkx, M., 2014, Synthetic Biology, volume 1. Ryadnov, M., Brunsveld, L. & Suga, H. (eds.). Royal Society of Chemistry, p. 164-186 359 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

5 Downloads (Pure)

Opsporen van diabetes met netvlies laserscans

Haar Romeny, ter, B. M., 2014, Het beste idee van 2014. Baijens, J. A. (ed.). Tilburg: De Wereld, p. 113-114 309 p.

Research output: Chapter in Book/Report/Conference proceedingChapterPopular

1 Downloads (Pure)

RegistrationShop: an interactive 3D medical volume registration system

Smit, N. N., Klein Haneveld, B., Staring, M., Eisemann, E., Botha, C. P. & Vilanova, A., 2014, Eurographics Workshop on Visual Computing for Biology and Medicine. Ivan Viola, K. B. & Ropinski, T. (eds.). Eurographics Association, p. 145-153 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Riemann-Finsler multi-valued geodesic tractography for HARDI

Sepasian, N., Thije Boonkkamp, J. H. M. T., Florack, L. M. J., Haar Romeny, B. M. T. & Vilanova, A., 2014, Visualization and Processing of Tensors and Higher Order Descriptors for Multi-Valued Data. Westin, C. F., Vilanova, A. & Burgeth, B. (eds.). Berlin: Springer, p. 209-225 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Riemann-Finsler multi-valued geodesic tractography for HARDI

Sepasian, N., Thije Boonkkamp, ten, J. H. M., Florack, L. M. J., Haar Romenij, ter, B. M. & Vilanova, A., 2014, Visualization and Processing of Tensors and Higher Order Descriptors for Multi-Valued Data, Mathematics and Visualization. Westin, C. F., Vilanova, A. & Burgeth, B. (eds.). Berlin: Springer, p. 209-225 (Mathematics and Visualization).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

2 Citations (Scopus)
3 Downloads (Pure)

Robustness of the gray code arrangements of the genetic code in mitochondria

Bosnacki, D., Eikelder, ten, H. M. M., Maanders, M. & Hilbers, P. A. J., 2014, ICT Innovations 2014 : World of Data. Madevska Bogdanova, A. & Gjorgjevikj, D. (eds.). Cham: Springer, p. 299-308 (Advances in Intelligent Systems and Computing; vol. 311).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Sharpening fibers in diffusion weighted MRI via erosion

Dela Haije, T. C. J., Duits, R. & Tax, C. M. W., 2014, Visualization and Processing of Tensors and Higher Order Descriptors for Multi-Valued Data, part II. Westin, C-F., Vilanova, A. & Burgeth, B. (eds.). Springer, p. 97-126 (Mathematics and Visualization).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

5 Citations (Scopus)

The molecular kinetics of the Fischer-Tropsch reaction

Santen, van, R. A., Ghouri, M. M., Markvoort, A. J. & Hensen, E. J. M., 2014, Bridging Heterogeneous and Homogeneous Catalysis : Concepts, Strategies and Applications. Li, C. & Liu, Y. (eds.). New York: Wiley, p. 553-606 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

1 Citation (Scopus)
1 Downloads (Pure)

Use of synthetic biology techniques to site-selective introduce posttranslational modifactions in proteins

Bosmans, R. P. G. & Brunsveld, L., 2014, Synthetic biology : volume 1. Ryadnov, M., Brunsveld, L. & Suga, H. (eds.). Cambridge: Royal Society of Chemistry, p. 31-78

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

2013

A high-fidelity and micro-anatomically accurate 3D finite element model for simulations of functional mitral valve

Lee, C. H., Oomen, P. J. A., Rabbah, J. P., Yoganathan, A., Gorman, R. C., Gorman, J. H., Amini, R. & Sacks, M. S., 11 Jul 2013, Functional Imaging and Modeling of the Heart - 7th International Conference, FIMH 2013, Proceedings. Ourselin, S., Rueckert, D. & Smith, N. (eds.). Berlin: Springer, p. 416-424 9 p. (Lecture Notes in Computer Science; vol. 7945).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

20 Citations (Scopus)
1 Downloads (Pure)

Cancer-specific ligand-receptor interactions

Kluza, E., Strijkers, G. J., Beets-Tan, R. G. H. & Nicolay, K., 1 Jul 2013, Cancer Targeted Drug Delivery: An Elusive Dream. Bae, Y. H., Mrsny, R. J. & Park, K. (eds.). New York: Springer, p. 461-507 47 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

2 Downloads (Pure)

Gd-containing nanoparticles as MRI contrast agents

Nicolay, K., Strijkers, G. J. & Grüll, H., 18 Feb 2013, The Chemistry of Contrast Agents in Medical Magnetic Resonance Imaging: Second Edition. Merbach, A., Helm, L. & Tóth, É. (eds.). Chichester: Wiley, p. 449-487 39 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

16 Citations (Scopus)
1 Downloads (Pure)