Projects per year
Organisation profile
Introduction / mission
Constructing computational models to improve the knowledge of diseases, biomedical processes and structures.
Highlighted phrase
Describing, understanding and ultimately controlling life's processes
Organisation profile
The research group Computational Biology develops computational models that help to obtain qualitative and quantitative knowledge of diseases, biomedical processes and structures. The computational models are developed based on a thorough understanding of systems biology modeling methods, data analysis techniques, machine learning, and parameter estimation algorithms. Topics of research are, amongst others, complex biochemical networks, diseases like metabolic syndrome, diabetes mellitus and cancer, and applied clinical data science. Next to data obtained through collaborations and partnerships with other university groups, companies and hospitals, within the Systems Biology for Oncology theme data is also achieved by own experiments. The group also puts efforts in enhancing the shift from ‘describing’ life’s processes to ‘understanding’ them and ‘capturing’ them in validated predictive models, and even ‘managing’ or ‘controlling’ them in real life. Research themes of the group are Systems Biology and Metabolic Disease, Systems Biology for Oncology, Immuno Systems Biology, and Data Science and Bioinformatics.
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Collaborations and top research areas from the last five years
Profiles
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Arjen-Kars Boer
- Biomedical Engineering, Chemical Biology - Associate Professor
- EAISI Health - Associate Professor
- Biomedical Engineering, Computational Biology - Associate Professor
Person: UHD : Associate Professor
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Dragan Bosnacki
- EAISI Health - Assistant Professor
- Biomedical Engineering, Computational Biology - Assistant Professor
Person: UD : Assistant Professor
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Petrus W.T. Bult
- Biomedical Engineering, Computational Biology - Doctoral Candidate
Person: Prom. : doctoral candidate (PhD)
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MetaboTwin: Improving health benefits of sustainable protein foods via simulation and prediction of metabolic responses to complex meals (LWV24148)
van Riel, N. A. W. (Project Manager), O'Donovan, S. (Project member), Müller, J. (Project member) & Slothouber, M. (Project communication officer)
1/04/25 → 30/09/29
Project: Third tier
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Personalised dietary advice for human and planetary health (LWV23098)
van Riel, N. A. W. (Project Manager), O'Donovan, S. (Project member) & Müller, J. (Project member)
1/04/24 → 31/03/28
Project: Third tier
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PRECODE: Gut-brain health effects of prebiotics in older adults with suspected cognitive decline (LWV22109)
van Riel, N. A. W. (Project Manager), Vacancy PHD (Project member), O'Donovan, S. (Project member), Beigy, M. (Project member), Van Gorp, P. (Project member) & Genga, L. (Project member)
1/05/23 → 31/03/27
Project: Third tier
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Active learning-guided mechanistic modeling reveals context-specific regulators of CXCL9 expression in pancreatic cancer cells
Wang, B.-R., Yelleswarapu, M., Descamps, L. & Eduati, F. (Corresponding author), Aug 2026, In: Molecular Systems Biology. 22, 8, p. 1360-1375 16 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile -
Advanced Hemodynamic Monitoring: Towards Multimodal Monitoring and Machine Learning to Predict and Identify Hemodynamic Instability in Critically Ill Patients
de Raat, F. M., 26 Oct 2026, (Accepted/In press) Eindhoven: Eindhoven University of Technology.Research output: Thesis › Phd Thesis 1 (Research TU/e / Graduation TU/e)
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A Serious Digital Game (SugarVita) to Support Diabetes Self-Management: Pilot Randomized Controlled Trial
Reinders, E. (Corresponding author-nrf), Cruts-Van de Meulengraaf, E., De Vries, R., van Riel, N., Van Gorp, P., Dieleman, J., Wouters-van Poppel, P. & Haak, H., 7 Aug 2026, In: JMIR Diabetes. 11, 11 p., e99345.Research output: Contribution to journal › Article › Academic › peer-review
Datasets
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The DiaGame Study: Lifestyle and Blood Glucose
van Riel, N. A. W. (Owner), de Vries, R. (Creator), Reinders, E. (Creator), Haak, H. R. (Supervisor) & Van Gorp, P. (Supervisor), Eindhoven University of Technology, 24 Jan 2026
DOI: 10.1177/29986702261416447, https://catalogus.healthdata.nl/en/datasets/948f97ef-a0ff-458f-a1bb-b65d3c8ab0fd
Dataset
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SugarVita: a Digital Board Game
van Riel, N. A. W. (Creator), Eindhoven University of Technology, 30 Apr 2024
https://clinicaltrials.gov/study/NCT06392178?term=NCT06392178
Dataset
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DiaGame: Serious and personalized game for selfmanagement of diabetes
van Riel, N. A. W. (Creator), Eindhoven University of Technology, 13 Nov 2023
https://www.onderzoekmetmensen.nl/en/trial/25562
Dataset
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Theme and Variations: Conditional Universal Differential Equations for Biological Heterogeneity
de Rooij, M. (Speaker)
13 Jul 2026Activity: Talk or presentation types › Invited talk › Scientific
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Managing identifiability and uncertainty in dynamic systems biology models
van Riel, N. A. W. (Speaker)
26 Jun 2026Activity: Talk or presentation types › Invited talk › Scientific
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Advancing Intensive Care Medicine through Interpretable AI
van Riel, N. A. W. (Speaker)
28 May 2026Activity: Talk or presentation types › Invited talk › Scientific
Press/Media
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Studies Conducted at Amsterdam University Medical Center on Obesity and Diabetes Recently Reported (Bariatric Surgery Improves Postprandial Vldl Kinetics and Restores Insulin-mediated Regulation of Hepatic Vldl)
21/09/23
1 item of Media coverage
Press/Media: Expert Comment
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Eindhoven University of Technology Researcher Details Research in Prostate Cancer (Exploring the Onset and Progression of Prostate Cancer through a Multicellular Agent-based Model)
18/08/23
1 item of Media coverage
Press/Media: Expert Comment
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Data on Proinsulin Reported by Bart van Sloun and Colleagues (Quantifying postprandial glucose responses using a hybrid modeling approach: Combining mechanistic and data-driven models in The Maastricht Study)
van Riel, N. A. W. & O'Donovan, S.
10/08/23
1 item of Media coverage
Press/Media: Expert Comment
Student theses
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Altered Global Organization of Structural Covariance Networks Relate to Childhood Absence Epilepsy
Eussen, M. J. A. (Author), Breeuwer, M. (Supervisor 1), Drenthen, G. S. (External coach), Bosnacki, D. (Supervisor 2) & Scannell, C. (Supervisor 2), 27 Feb 2023Student thesis: Master
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A machine learning approach to integrative multi-omics in chronic heart failure
Maasland, T. D. (Author), van Riel, N. A. W. (Supervisor 1), Hilbers, P. A. J. (Supervisor 2), Bosnacki, D. (Supervisor 2) & Levin, E. (External coach), 25 Aug 2022Student thesis: Master
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A multimodal deep learning framework for predicting cancer drug response using transcriptomics and chemical descriptors
Deben, L. M. (Author), Eduati, F. (Supervisor 1), Sept 2025Student thesis: Master
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