Projects per year
Organisation profile
Introduction / mission
Constructing computational models to improve the knowledge of diseases, biomedical processes and structures.
Highlighted phrase
Describing, understanding and ultimately controlling life's processes
Organisation profile
The research group Computational Biology develops computational models that help to obtain qualitative and quantitative knowledge of diseases, biomedical processes and structures. The computational models are developed based on a thorough understanding of systems biology modeling methods, data analysis techniques, machine learning, and parameter estimation algorithms. Topics of research are, amongst others, complex biochemical networks, diseases like metabolic syndrome, diabetes mellitus and cancer, and applied clinical data science. Next to data obtained through collaborations and partnerships with other university groups, companies and hospitals, within the Systems Biology for Oncology theme data is also achieved by own experiments. The group also puts efforts in enhancing the shift from ‘describing’ life’s processes to ‘understanding’ them and ‘capturing’ them in validated predictive models, and even ‘managing’ or ‘controlling’ them in real life. Research themes of the group are Systems Biology and Metabolic Disease, Systems Biology for Oncology, Immuno Systems Biology, and Data Science and Bioinformatics.
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Collaborations and top research areas from the last five years
Profiles
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Arjen-Kars Boer
- Biomedical Engineering, Chemical Biology - University Researcher
- EAISI Health - University Researcher
- Biomedical Engineering, Computational Biology - University Researcher
Person: OWP : University Teacher / Researcher
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Dragan Bosnacki
- Biomedical Engineering, Computational Biology - Assistant Professor
- EAISI Health - Assistant Professor
Person: UD : Assistant Professor
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Hao Cao
- Biomedical Engineering, Computational Biology - Former Doctoral Candidate
Person: Prom. : doctoral candidate (PhD)
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ACACIA TKI2112P08
van Riel, N. A. W. (Project Manager) & van Mierlo, R. (Project member)
1/05/21 → 30/04/26
Project: Third tier
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DiaGame: DiaGame: Serious and personalized game for self-management of diabetes
van Riel, N. A. W. (Project Manager), Van Gorp, P. (Project communication officer), de Vries, R. (Project member) & Ferreira de Carvalho, D. (Project communication officer)
1/01/19 → 31/12/25
Project: Second tier
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MATRyOSka: Metabolic adaptation, transitions and resilience in overweight individuals
van Riel, N. A. W. (Project Manager), O'Donovan, S. (Project member), Arts, I. C. W. (Project member) & Afman, L. A. (Project member)
1/10/17 → 30/06/23
Project: Research direct
Research output
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Diurnal differences in postprandial glucose and triglyceride metabolism reveal metabolic flexibility and resilience
Dörner, R., Hägele, F., O'Donovan, S. D., Miles-Chan, J. L., Müller, M. & Bosy-Westphal, A. (Corresponding author), 1 May 2025, In: American Journal of Physiology : Cell Physiology. 328, 5, p. C1383-C1388 6 p.Research output: Contribution to journal › Article › Academic › peer-review
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From clinical data to decision support: Liquid biopsy for minimally invasive lung cancer diagnosis and treatment monitoring
Visser, E., 10 Apr 2025, Eindhoven: Eindhoven University of Technology. 230 p.Research output: Thesis › Phd Thesis 1 (Research TU/e / Graduation TU/e)
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Mathematically mapping the network of cells in the tumor microenvironment
van Santvoort, M., Lapuente Santana, O., Zopoglou, M., Zackl, C., Finotello, F., van der Hoorn, P. & Eduati, F. (Corresponding author), 24 Feb 2025, In: Cell Reports Methods. 5, 2, 21 p., 100985.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile6 Downloads (Pure)
Datasets
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SugarVita: a Digital Board Game
van Riel, N. A. W. (Creator), Eindhoven University of Technology, 30 Apr 2024
https://clinicaltrials.gov/study/NCT06392178?term=NCT06392178
Dataset
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DiaGame: Serious and personalized game for selfmanagement of diabetes
van Riel, N. A. W. (Creator), Eindhoven University of Technology, 13 Nov 2023
https://www.onderzoekmetmensen.nl/en/trial/25562
Dataset
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EDES1.0
van Riel, N. A. W. (Creator), EMBL-EBI, 7 Mar 2024
https://www.ebi.ac.uk/biomodels/MODEL2403070001
Dataset
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The Mixed Meal Model; quantifying metabolic resilience in overweight and obesity
O'Donovan, S. (Speaker)
8 Oct 2022 → 12 Oct 2022Activity: Talk or presentation types › Contributed talk › Scientific
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Digital metabolic twins; quantifying metabolic resilience in overweight/obesity
O'Donovan, S. (Speaker)
25 May 2022Activity: Talk or presentation types › Contributed talk › Scientific
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Quantifying metabolic resilience; getting the most out of your challenge test data.
O'Donovan, S. (Speaker)
5 May 2022Activity: Talk or presentation types › Contributed talk › Scientific
Press/Media
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Eindhoven University of Technology Researcher Details Research in Prostate Cancer (Exploring the Onset and Progression of Prostate Cancer through a Multicellular Agent-based Model)
18/08/23
1 item of Media coverage
Press/Media: Expert Comment
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Data on Proinsulin Reported by Bart van Sloun and Colleagues (Quantifying postprandial glucose responses using a hybrid modeling approach: Combining mechanistic and data-driven models in The Maastricht Study)
van Riel, N. A. W. & O'Donovan, S.
10/08/23
1 item of Media coverage
Press/Media: Expert Comment
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Eindhoven University of Technology: Medical Sensors are 'the Canary in the Mine'
Mestrom, E. & van der Stam, J. A.
19/04/23
1 item of Media coverage
Press/Media: Expert Comment
Student theses
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Altered Global Organization of Structural Covariance Networks Relate to Childhood Absence Epilepsy
Eussen, M. J. A. (Author), Breeuwer, M. (Supervisor 1), Drenthen, G. S. (External coach), Bosnacki, D. (Supervisor 2) & Scannell, C. (Supervisor 2), 27 Feb 2023Student thesis: Master
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A machine learning approach to integrative multi-omics in chronic heart failure
Maasland, T. D. (Author), van Riel, N. A. W. (Supervisor 1), Hilbers, P. A. J. (Supervisor 2), Bosnacki, D. (Supervisor 2) & Levin, E. (External coach), 25 Aug 2022Student thesis: Master
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Analysis of Nuclear Dynamics and Morphology on Topographical Surfaces from Static Images
Derwig, S. (Author), de Boer, J. (Supervisor 1) & Bosnacki, D. (Supervisor 2), 29 Aug 2024Student thesis: Master