Projects per year
Organization profile
Introduction / mission
Constructing computational models to improve the knowledge of diseases, biomedical processes and structures.
Highlighted phrase
Describing, understanding and ultimately controlling life's processes
Organisational profile
The research group Computational Biology develops computational models that help to obtain qualitative and quantitative knowledge of diseases, biomedical processes and structures. The computational models are developed based on a thorough understanding of molecular modeling methods, data analysis techniques, machine learning, systems biology, and parameter estimation techniques. Next to data obtained through collaborations and partnerships with other university groups, companies and hospitals, within the Synthetic Biology arena data is also achieved by own experiments. Topics of research are, amongst others, biomembranes, protein interactions, complex biochemical networks, and diseases like metabolic syndrome, diabetes mellitus and cancer. The group also puts efforts in enhancing the shift from ‘describing’ life’s processes to ‘understanding’ them and ‘capturing’ them in validated predictive models, and even ‘managing’ or ‘controlling’ them in real life. Research themes of the group are Molecular Simulations, Systems Biology and Metabolic Disease, Systems Biology for Oncology, Synthetic Biology, Data Science and Bioinformatics.
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Network
Profiles
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Mart W. Bartelds, MSc
- Biomedical Engineering, Computational Biology - University Researcher
- Biomedical Engineering, Synthetic Biology - University Researcher
Person: OWP : University Teacher / Researcher
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Bas Bögels
- Biomedical Engineering, Computational Biology - Doctoral Candidate
- Biomedical Engineering, Chemical Biology - Doctoral Candidate
- Biomedical Engineering, Synthetic Biology - Doctoral Candidate
Person: Prom. : doctoral candidate (PhD)
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Dragan Bosnacki
- Biomedical Engineering, Systems Biology and Metabolic Disease - Assistant Professor
- Biomedical Engineering, Computational Biology - Assistant Professor
- EAISI Health - Assistant Professor
Person: UD : Assistant Professor
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DiaGame: Serious and personalized game for self-management of diabetes
van Riel, N. A. W., de Vries, R., Ferreira de Carvalho, D., Hilbers, P. A. J., Van Gorp, P., Kaymak, U., Haak, H. R., Wouters-van Poppel, P. & Reinders, E.
1/01/19 → 31/12/25
Project: Research direct
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NWO/Complexity/MATRyOSka
van Riel, N. A. W., O'Donovan, S., Arts, I. C. W. & Afman, L.
1/10/17 → 30/06/23
Project: Research direct
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Research output
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A Synthetic Protocell‐Based Heparin Scavenger
Liu, Q., Yang, S., Seitz, I., Makri Pistikou, A-M., de Greef, T. F. A. & Kostiainen, M., 29 Mar 2023, In: Small. 19, 13, 6 p., e2201790.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile2 Citations (Scopus)10 Downloads (Pure) -
A Theoretical Framework for Implementable Nucleic Acids Feedback Systems
Paulino, N. M. G., Foo, M., de Greef, T. F. A., Kim, J. & Bates, D. G., 12 Apr 2023, In: Bioengineering. 10, 4, 31 p., 466.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile2 Downloads (Pure) -
A wearable patch based remote early warning score (REWS) in major abdominal cancer surgery patients
van der Stam, J. A., Mestrom, E. H. J., Nienhuijs, S. W., de Hingh, I. H. J. T., Boer, A-K., van Riel, N. A. W., de Groot, K. T. J., Verhaegh, W., Scharnhorst, V. & Bouwman, R. A., Jan 2023, In: European Journal of Surgical Oncology. 49, p. 278-284 7 p.Research output: Contribution to journal › Article › Academic › peer-review
Open AccessFile7 Downloads (Pure)
Datasets
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Database for "The impact of amino acids on postprandial glucose and insulin kinetics in humans: a quantitative overview"
van Sloun, B. (Creator), Goossens, G. H. (Creator), Erdos, B. (Creator), Lenz, M. (Creator), van Riel, N. A. W. (Creator), Arts, I. C. W. (Creator) & Wauters, F. (Contributor), DataverseNL, 21 Oct 2020
DOI: 10.34894/rnzi0a
Dataset
Prizes
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AMC Principal Investigator
van Riel, Natal A.W. (Recipient), 1 May 2016
Prize: Other › Career, activity or publication related prizes (lifetime, best paper, poster etc.) › Scientific
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Best poster award
Rozendaal, Yvonne (Recipient), 28 Oct 2016
Prize: Other › Career, activity or publication related prizes (lifetime, best paper, poster etc.) › Scientific
Activities
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Digital metabolic twins; quantifying metabolic resilience in overweight/obesity
Shauna O'Donovan (Speaker)
25 May 2022Activity: Talk or presentation types › Contributed talk › Scientific
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Quantifying metabolic resilience; getting the most out of your challenge test data.
Shauna O'Donovan (Speaker)
5 May 2022Activity: Talk or presentation types › Contributed talk › Scientific
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Digital Twins; quantifying metabolic resilience from meal response data
Shauna O'Donovan (Speaker)
15 Jun 2021Activity: Talk or presentation types › Invited talk › Scientific
Press/Media
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Storing Data in DNA Microcapsules may be Possible Soon
Tom F.A. de Greef & Bas Bögels
5/05/23
5 items of Media coverage
Press/Media: Expert Comment
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News Does the Future of Data Storage Lie in DNA Microcapsules? DNA archival storage within reach thanks to new PCR technique.
Tom F.A. de Greef & Bas Bögels
4/05/23 → 5/05/23
4 items of Media coverage
Press/Media: Expert Comment
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New PCR Technique Offers the Future of Data Storage Using DNA Microcapsules
5/05/23
1 item of Media coverage
Press/Media: Expert Comment
Impacts
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Bioinformatics
Rina van Dijck-Postma (Content manager), Sylvia van Beek-Verschure (Content manager), Lieke van Gorp (Content manager) & Amy Broeders (Content manager)
Impact: Research Topic/Theme (at group level)
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Brain Image Analysis
Josien P.W. Pluim (Content manager), Sylvia van Beek-Verschure (Content manager), Lieke van Gorp (Content manager), Amy Broeders (Content manager) & Erica Jansen (Content manager)
Impact: Research Topic/Theme (at group level)
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Cardiovascular Image Analysis
Josien P.W. Pluim (Content manager), Sylvia van Beek-Verschure (Content manager), Lieke van Gorp (Content manager), Amy Broeders (Content manager) & Erica Jansen (Content manager)
Impact: Research Topic/Theme (at group level)
Student theses
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A Coarse-Grained Molecular Modelling Method for Studying Viruses
Author: de Waard, T., 31 Oct 2022Supervisor: Hilbers, P. A. J. (Supervisor 1) & Markvoort, A. J. (Supervisor 2)
Student thesis: Master
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A computational biology framework: a data analysis tool to support biomedical engineers in their research
Author: Beishuizen, T. P. A., 29 Nov 2018Supervisor: Bosnacki, D. (Supervisor 1), Cheplygina, V. (Supervisor 2), Hilbers, P. A. J. (Supervisor 2), Fletcher, G. (Supervisor 2) & Vanschoren, J. (Supervisor 2)
Student thesis: Master
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Altered Global Organization of Structural Covariance Networks Relate to Childhood Absence Epilepsy
Author: Eussen, M. J. A., 2022Supervisor: Breeuwer, M. (Supervisor 1), Drenthen, G. S. (External coach), Bosnacki, D. (Supervisor 2) & Scannell, C. (Supervisor 2)
Student thesis: Master