Student theses

0D lumped approach to incorporate the dynamic part of the pressure at vessel junctions in a 1D wave propagation model

Author: van den Boom, T., 18 Jan 2018

Supervisor: Huberts, W. (Supervisor 1) & van de Vosse, F. (Supervisor 2)

Student thesis: Master

3D medical image segmentation with labeled and unlabeled data using autoencoders

Author: Sital, C., 28 Nov 2019

Supervisor: Raaijmakers, A. (Supervisor 1), Weese, J. (External person) (External coach) & Brosch, T. (External person) (External coach)

Student thesis: Master

A computational biology framework: a data analysis tool to support biomedical engineers in their research

Author: Beishuizen, T., 29 Nov 2018

Supervisor: Bosnacki, D. (Supervisor 1), Cheplygina, V. (Supervisor 2), Hilbers, P. (Supervisor 2), Fletcher, G. (Supervisor 2) & Vanschoren, J. (Supervisor 2)

Student thesis: Master

A constitutive material model to describe the mechanical behavior of human skin in shear, tensile and indentation tests

Author: Rooijakkers, T., 31 Aug 2017

Supervisor: Oomens, C. (Supervisor 1), Loerakker, S. (Supervisor 2), Lopata, R. (Supervisor 2) & Soetens, J. (Supervisor 2)

Student thesis: Master

A deeper understanding of RDS and the LISA-procedure: signal analysis and modelling approach

Author: Geurten, L., 28 Feb 2019

Supervisor: Bovendeerd, P. (Supervisor 1), Andriessen, P. (External coach) & van Pul, C. (External coach)

Student thesis: Master

A monolithic fluid-structure interaction model to study pulse wave propagation in aortic dissections

Author: Boschman, A., 19 Dec 2019

Supervisor: van de Vosse, F. N. (Supervisor 1), Huberts, W. (Supervisor 2), van 't Veer, M. (Supervisor 2), van Brummelen, E. (. (Supervisor 2) & Verhoosel, C. V. (Supervisor 2)

Student thesis: Master

Analyzing the relation between brain lesions and short association fibers using diffusion MRI

Author: Kamps, J., Jun 2017

Supervisor: Sepasian, N. (Supervisor 1), Fuster, A. (Supervisor 2) & Pluim, J. (Supervisor 2)

Student thesis: Master

An in-silico imaging system based on k-Wave for multi-perspective ultrasound imaging of abdominal aortic aneurysms

Author: Nooijens, S., 31 Jan 2019

Supervisor: van de Vosse, F. (Supervisor 1), Lopata, R. (Supervisor 2), Oomens, C. (Supervisor 2), Petterson, N. (Supervisor 2) & Bouwman, R. (Supervisor 2)

Student thesis: Master

A novel in vitro flow model for testing mechanical heart valve anticoagulant therapies

Author: Devos, M., 29 Aug 2019

Supervisor: van de Vosse, F. (Supervisor 1)

Student thesis: Master

A physiologically representative in vitro model of the coronary circulation

Author: Bohté, V., 31 Aug 2002

Supervisor: Baaijens, F. (Supervisor 1), Pijls, N. (Supervisor 2), Rutten, M. (Supervisor 2), van de Vosse, F. (Supervisor 2) & de Bruyne, B. (External person) (External coach)

Student thesis: Master

A physiology based glucose-insulin-GLP-1 model: explaining changes observed after Roux-en-Y gastric bypass

Author: Thijssen, L., 30 Aug 2018

Supervisor: Sips, F. (Supervisor 1), Yildirim, V. (Supervisor 2), van Riel, N. (Supervisor 2) & Hilbers, P. (Supervisor 2)

Student thesis: Master

A predictive numerical model for myocardial temperature during intracoronary hypothermia in acute myocardial infarction

Author: van Willigen, B., 31 Aug 2017

Supervisor: van de Vosse, F. (Supervisor 1) & Otterspoor, L. C. (External person) (External coach)

Student thesis: Master

Assessing strain and damage in cartilage explants with ultrasound

Author: Stavenuiter, I., 31 Jan 2019

Supervisor: Ito, K. (Supervisor 1), van Donkelaar, R. (Supervisor 2), Lopata, R. (Supervisor 2) & van de Vosse, F. (Supervisor 2)

Student thesis: Master

Assessment of the hemodynamics in the coronary circulation: an in-vitro study

Author: Hoogenbosch, T., 29 Aug 2019

Supervisor: Rutten, M. (Supervisor 1)

Student thesis: Master

A three dimensional patient-specific cardiovascular fluid dynamics model to access the pressure drop over iliac artery stenoses

Author: van den Elzen, M., 19 Dec 2019

Supervisor: van de Vosse, F. N. (Supervisor 1), Huberts, W. (Supervisor 2) & Gijsen, F. J. (Supervisor 2)

Student thesis: Master

Automated spinous process segmentation in X-ray images using convolutional neural networks

Author: Roodhorst, S., 17 Dec 2018

Supervisor: Pluim, J. (Supervisor 1) & Walsum, van, T. (External person) (External coach)

Student thesis: Master

Bioactive glass granules as bone graft substitute in osteomyelitic defects: application in load-bearing defects and a 2-year case study

Author: Gabriels, F., 26 Jun 2017

Supervisor: Ito, K. (Supervisor 1), van Rietbergen, B. (Supervisor 2), Arts, J. (External coach), Geurts, J. A. (External person) (External coach), Bovendeerd, P. (Supervisor 2) & van Gestel, N. (Supervisor 2)

Student thesis: Master

Biomarkers as predictor of quality of life in bariatric patients

Author: Schouten, J., 31 Jan 2019

Supervisor: Hilbers, P. (Supervisor 1), van Riel, N. (Supervisor 2), Scharnhorst, V. (Supervisor 2), van Loon, S. (Supervisor 2) & Deneer, R. (Supervisor 2)

Student thesis: Master

Brain blood perfusion and white matter integrity in accelerated cognitive ageing patiens with epilepsy

Author: Stevens, J., 31 Oct 2019

Supervisor: Breeuwer, M. (Supervisor 1), Pluim, J. (Supervisor 2), Aldenkamp, A. (Supervisor 2), Zinger, S. (Supervisor 2), Mestrom, R. (Supervisor 2) & Bernas, A. (Supervisor 2)

Student thesis: Master

Canonical correlation analysis on microbial and metabolite data of individuals with metabolic syndrome

Author: van der Stam, J., 19 Jan 2019

Supervisor: Hilbers, P. (Supervisor 1), van Riel, N. (Supervisor 2), Veta, M. (Supervisor 2), Levin, E. (External person) (External coach) & Nieuwdorp, M. (External person) (External coach)

Student thesis: Master

Cationic stabilization of DNA origami investigated through atomistic simulations

Author: Hendrikx, P., 29 Nov 2018

Supervisor: Roodhuizen, J. (Supervisor 1), Markvoort, B. (Supervisor 2), de Greef, T. (Supervisor 2) & Hilbers, P. (Supervisor 2)

Student thesis: Master

Causal candidate genes identification for familial hypercholesterolemia family based on whole-genome sequencing

Author: Wang, Q., 31 Aug 2017

Supervisor: Hilbers, P. (Supervisor 1), van Riel, N. (Supervisor 2), Hovingh, K. (External person) (External coach), Bosnacki, D. (Supervisor 2) & Veta, M. (Supervisor 2)

Student thesis: Master

Clustered tumor phenotypes and resectability prediction for PDA using radiomic feature analysis

Author: Janse, M. H., 27 Sep 2018

Supervisor: de With, P. (Supervisor 1), Pluim, J. (Supervisor 2), Zinger, S. (Supervisor 2) & Hermans, J. (External person) (External coach)

Student thesis: Master

Comparing heart assist devices, using a lumped parameter model and mock-loop

Author: van de Meerakker, T., 30 Jan 2020

Supervisor: van de Vosse, F. N. (Supervisor 1), Rutten, M. C. (Supervisor 2), van Dort, D. (External person) (External coach), Foolen, J. (Supervisor 2) & Peij, K. (Supervisor 2)

Student thesis: Master

File

Computing the macrostructural force-length relationship from microstructural fiber network architecture

Author: Brouns, K., 28 Sep 2017

Supervisor: van de Vosse, F. (Supervisor 1), Arts, J. (Supervisor 2), Heusinkveld, M. (External coach), Reesink, K. (External coach) & Spronck, B. (External coach)

Student thesis: Master

Content based CT retrieval for pulmonary nodules: deep metric learning based feature extraction

Author: Aerts, T., 28 Feb 2019

Supervisor: Menkovski, V. (Supervisor 1), Holenderski, M. (Supervisor 2) & Veta, M. (Supervisor 2)

Student thesis: Master

File

Convolutional neural networks for detection of metastases in patients diagnosed with breast cancer

Author: Nijhof, T., 25 Jan 2018

Supervisor: Pluim, J. (Supervisor 1)

Student thesis: Master

Coupling of an enzymatic actuator to an oscillating PEN-based DNA network

Author: Nijenhuis, M., 25 Jan 2018

Supervisor: Meijer, L. (Supervisor 1), de Greef, T. (Supervisor 2) & Hilbers, P. (Supervisor 2)

Student thesis: Master

Creating a non-linear response in dCas9-based gene repression: tuning the sgRNA concentration with the use of enzymatic coupled degradation

Author: Uittenbogaard, P., 20 May 2019

Supervisor: Hilbers, P. (Supervisor 1), de Greef, T. (Supervisor 2), Ottmann, C. (Supervisor 2) & Dubuc, E. (Supervisor 2)

Student thesis: Master

CycleGAN for coronay vessel segmentation

Author: van den Bosch, P., 29 Aug 2019

Supervisor: Pluim, J. (Supervisor 1), Bovendeerd, P. (Supervisor 2), Veta, M. (Supervisor 2) & Oliván-Bescós, J. (External person) (External coach)

Student thesis: Master

Data mining and analysis for the insulin signalling pathway

Author: Rozendaal, Y., Jul 2011

Supervisor: Çölmekçi, C. (Supervisor 1) & van Riel, N. (Supervisor 1)

Student thesis: Bachelor

Deep learning approaches for prostate cancer detection and grading in Bi-parametric MRI

Author: de Vente, C., 29 Aug 2019

Supervisor: Veta, M. (Supervisor 1), Vos, P. (External person) (External coach), van Riel, N. (Supervisor 2) & Pluim, J. (Supervisor 2)

Student thesis: Master

Deep learning for the detection of cerebral microinfarcts in MR images

Author: Volmer, L., 31 Oct 2019

Supervisor: Pluim, J. (Supervisor 1), Veta, M. (Supervisor 2) & van Riel, N. (Supervisor 2)

Student thesis: Master

Design of a DNA-based tension probe for the quantification of cellular traction forces at a molecular level

Author: van der Putten, C., 25 Jan 2018

Supervisor: Kurniawan, N. (Supervisor 1), de Greef, T. (Supervisor 2) & Bouten, C. (Supervisor 2)

Student thesis: Master

Diffusion tensor residuals as a potential biomarker for brain tissue damage

Author: van Rijn, A., 23 Apr 2020

Supervisor: Pluim, J. P. (Supervisor 1), Leemans, A. L. (External person) (External coach) & De Luca, A. (External person) (External coach)

Student thesis: Master

DNA-based molecular tension sensors for the quantification of cellular traction forces

Author: Somers, B., 29 Mar 2018

Supervisor: de Greef, T. (Supervisor 1) & Merkx, M. (Supervisor 2)

Student thesis: Master

Downstream coupling of PEN-based chemical reaction networks

Author: van der Zee, D., 31 Aug 2017

Supervisor: van Roekel, H. (Supervisor 1) & de Greef, T. (Supervisor 2)

Student thesis: Master

ECLS on heart failure patients: a mock circulation model

Author: Cornelisse, Y., 22 Feb 2018

Supervisor: Rutten, M. (Supervisor 1)

Student thesis: Master

Estimating boundary conditions for a 1D pulse wave propagation model with detailed cerebral arterial networks

Author: Franz, J., 25 Jan 2018

Supervisor: van de Vosse, F. (Supervisor 1), Hilbers, P. (Supervisor 2), Mess, W. H. (External person) (External coach), Huberts, W. (Supervisor 2), Gommer, E. (External coach) & Stevens, R. (External coach)

Student thesis: Master

Expanding ADAPT to model heterogeneous datasets and application to hyperinsulinemic euglycemic clamp data

Author: van Beek, P., 30 Aug 2018

Supervisor: van Riel, N. (Supervisor 1), Hilbers, P. (Supervisor 2), Sips, F. (Supervisor 2) & Rozendaal, Y. (Supervisor 2)

Student thesis: Master

Experimental verification of a 4-D CFD simulation of the left ventricular pump function

Author: Hagelaars, M., 25 Jan 2018

Supervisor: van de Vosse, F. (Supervisor 1), Rutten, M. (Supervisor 2), Lopata, R. (Supervisor 2), Loerakker, S. (Supervisor 2) & Hoeijmakers, M. (Supervisor 2)

Student thesis: Master

Effect of SNR and user-defined tractography parameters on group analyses of diffusion tensor metrics

Author: Vos, I., 27 Feb 2020

Supervisor: Breeuwer, M. (Supervisor 1), Leemans, A. L. (External person) (External coach) & De Luca, A. (External person) (External coach)

Student thesis: Master

Feasibility of a model for non-invasive estimation of intracranial pressure using data assimilation

Author: Vijgeboom, Y., 27 Feb 2020

Supervisor: Huberts, W. (Supervisor 1), Stevens, R. R. (External coach), van de Vosse, F. N. (Supervisor 2), Mess, W. H. (External person) (External coach) & Gommer, E. D. (External coach)

Student thesis: Master

From hyperspectral data cube to tumor prediction

Author: Weijtmans, P., 20 Jun 2019

Supervisor: Pluim, J. (Supervisor 1) & Shan, C. (Supervisor 2)

Student thesis: Master