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2019

Deep learning with convolutional neural networks for histopathology image analysis

Bosnacki, D., van Riel, N. A. W. & Veta, M., 2019, Automated reasoning for systems biology and medicine. Lio, P. & Zuliani, P. (eds.). Springer, p. 453-469 (Computational Biology Series; vol. 30).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

1 Downloads (Pure)

Vascular biomarkers for diabetes and diabetic retinopathy screening

Huang, F., Abbasi-Sureshjani, S., Zhang, J., Bekkers, E. J., Dasht Bozorg, B. & ter Haar Romeny, B. M., 22 Nov 2019, Computational Retinal Image Analysis: Tools, Applications and Perspectives. Trucco, E., MacGillivray, T. & Xu, Y. (eds.). Academic Press Inc., p. 319-352 34 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

2018

COMPAY 2018 preface

Ciompi, F., van der Laak, J., Rajpoot, N., McKenna, S., Veta, M. & Snead, D., 1 Jan 2018, Computational Pathology and Ophthalmic Medical Image Analysis First International Workshop, COMPAY 2018, and 5th International Workshop, OMIA 2018, Held in Conjunction with MICCAI 2018, Granada, Spain, September 16 - 20, 2018, Proceedings. Springer, p. VII (Lecture Notes in Computer Science; vol. 11039)(Image processing, computer vision, patters recognition and graphs book sub series; vol. 11039).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Open Access
2017

Adaptive reorientation of myofiber orientation in a model of biventricular cardiac mechanics: The effect of triaxial active stress, passive shear stiffness, and activation sequence

Pluijmert, M. H., Delhaas, T. & Bovendeerd, P. H. M., 14 Jun 2017, Biomechanics of living organs: Hyperelastic constitutive laws for finite element modeling. Payan, Y. & Ohayon, J. (eds.). Academic Press Inc., p. 449-468 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Automatic atlas-based segmentation of brain white matter in neonates at risk for neurodevelopmental disorders

Neto Fonseca, L. T., van Pul, C., Lori, N. F., van den Boom, R., Andriessen, P., Buijs, J. & Vilanova Bartroli, A., Jan 2017, Modeling, analysis, and visualization of anisotropy. Schultz, T., Özarslan, E. & Hotz, I. (eds.). 9783319613574 ed. Cham: Springer, p. 355-372 18 p. (Mathematics and Visualization).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

1 Citation (Scopus)

Protein scaffolds and higher-order complexes in synthetic biology

den Hamer, A., Rosier, B. J. H. M., Brunsveld, L. & de Greef, T. F. A., 29 Nov 2017, Synthetic Biology : Volume 2. Ryadnov, M., Brunsveld, L. & Suga, H. (eds.). Cambridge: Royal Society of Chemistry, p. 65-96

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

3 Downloads (Pure)
2016

Segmentation of the left ventricle in cardiac MRI using an ELM model

Luo, Y., Yang, B., Xu, L., Hao, L., Liu, J., Yao, Y. & van de Vosse, F. N., 2016, Proceedings of ELM-2015, Vol. 1: Theory, Algorithms and Applications (I). Cao, J., Mao, K., Wu, J. & Lendasse, A. (eds.). Dordrecht: Springer, p. 147-157 11 p. (Proceedings in Adaptation Learning and Optimization).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

16 Citations (Scopus)
2015

Biologically-inspired supervised vasculature segmentation in SLO retinal fundus images

Abbasi-Sureshjani, S., Smit-Ockeloen, I. M., Zhang, J. & ter Haar Romenij, B. M., 4 Jul 2015, Image Analysis and Recognition: 12th International Conference, ICIAR 2015, Niagara Falls, ON, Canada, July 22-24, 2015, Proceedings. Berlin: Springer, p. 325-334 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

19 Citations (Scopus)
1 Downloads (Pure)

Cardiac motion estimation using ultrafast ultrasound imaging tested in a finite element model of cardiac mechanics

Nillesen, M. M., Saris, A., Hansen, H. H. G., Fekkes, S., van Slochteren, F. J., Bovendeerd, P. & Korte, de, C. L., 2015, Functional Imaging and Modeling of the Heart: 8th International Conference, FIMH 2015, Maastricht, The Netherlands, June 25-27, 2015. Proceedings. van Assen, H., Bovendeerd, P. & Delhaas, T. (eds.). Berlin: Springer, p. 207-214 (LNCS; vol. 9126).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

8 Citations (Scopus)
3 Downloads (Pure)

Contextual diffusion image post-processing aids clinical applications

Prckovska, V., Andorrà, M., Villoslada, P., Martinez-Heras, E., Duits, R., Fortin, D., Rodrigues, P. & Descoteaux, M., 2015, Visualization and Processing of Higher Order Descriptors for Multi-Valued Data. Hotz, I. & Schultz, T. (eds.). Cham: Springer, p. 353-377 383 p. (Mathematics and Visualization).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

4 Citations (Scopus)
2 Downloads (Pure)

Direction-controlled DTI interpolation

Florack, L. M. J., Dela Haije, T. C. J. & Fuster, A., 2015, Visualization and Processing of Higher Order Descriptors for Multi-Valued Data. Hotz, I. & Schultz, T. (eds.). Cham: Springer, p. 149-162 383 p. (Mathematics and Visualization).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

6 Downloads (Pure)

Finslerian diffusion and the Bloch–Torrey equation

Dela Haije, T. C. J., Fuster, A. & Florack, L. M. J., 2015, Visualization and Processing of Higher Order Descriptors for Multi-Valued Data. Hotz, I. & Schultz, T. (eds.). Cham: Springer, p. 21-35 383 p. (Mathematics and Visualization).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

3 Downloads (Pure)

How to choose myofiber orientation in a biventricular finite element model?

Pluijmert, M., Prinzen, F., Flores De La Parra, A., Kroon, W., Delhaas, T. & Bovendeerd, P., 2015, Functional Imaging and Modeling of the Heart: 8th International Conference, FIMH 2015, Maastricht, The Netherlands, June 25-27, 2015. Proceedings. van Assen, H., Bovendeerd, P. & Delhaas, T. (eds.). Berlin: Springer, p. 373-381 (Lecture Notes in Computer Science; vol. 9126).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

3 Downloads (Pure)
2014

A geometric model for the functional circuits of the visual front-end

ter Haar Romeny, B. M., 2014, Brain-Inspired Computing: International Workshop, BrainComp 2013, Cetraro, Italy, July 8-11, 2013, Revised Selected Papers. Grandinetti, L., Lippert, T. & Petkov, N. (eds.). Cham: Springer, p. 35-50 16 p. (Lecture Notes in Computer Science; vol. 8603).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Cuspless sub-Riemannian geodesics within the Euclidean motion group SE(d)

Duits, R., Ghosh, A., Dela Haije, T. C. J. & Sachkov, Y., 2014, Neuromathematics of Vision. Citti, G. & Sarti, A. (eds.). Berlin: Springer, p. 173-215 (Lecture Notes in Morphogenesis).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Fuzzy fibers: uncertainty in dMRI tractography

Schultz, T., Vilanova, A., Brecheisen, R. & Kindlmann, G., 1 Jan 2014, Scientific visualization: uncertainty, multifield, biomedical, and scalable visualization. Hansen, C. D., Chen, M., Johnson, C. R., Kaufman, A. E. & Hagen, H. (eds.). London: Springer, p. 79-92 14 p. (Mathematics and Visualization).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

5 Citations (Scopus)

Higher-order tensors in diffusion imaging

Schultz, T., Fuster, A., Ghosh, A., Deriche, R., Florack, L. M. J. & Lim, L. H., 2014, Visualization and Processing of Tensors and Higher Order Descriptors for Multi-Valued Data, Part III. Westin, C-F., Vilanova, A. & Burgeth, B. (eds.). Springer, p. 129-161 (Mathematics and Visualization).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

14 Citations (Scopus)
4 Downloads (Pure)

Opsporen van diabetes met netvlies laserscans

Haar Romeny, ter, B. M., 2014, Het beste idee van 2014. Baijens, J. A. (ed.). Tilburg: De Wereld, p. 113-114 309 p.

Research output: Chapter in Book/Report/Conference proceedingChapterPopular

1 Downloads (Pure)

RegistrationShop: an interactive 3D medical volume registration system

Smit, N. N., Klein Haneveld, B., Staring, M., Eisemann, E., Botha, C. P. & Vilanova, A., 2014, Eurographics Workshop on Visual Computing for Biology and Medicine. Ivan Viola, K. B. & Ropinski, T. (eds.). Eurographics Association, p. 145-153 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Riemann-Finsler multi-valued geodesic tractography for HARDI

Sepasian, N., Thije Boonkkamp, ten, J. H. M., Florack, L. M. J., Haar Romenij, ter, B. M. & Vilanova, A., 2014, Visualization and Processing of Tensors and Higher Order Descriptors for Multi-Valued Data, Mathematics and Visualization. Westin, C. F., Vilanova, A. & Burgeth, B. (eds.). Berlin: Springer, p. 209-225 (Mathematics and Visualization).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

2 Citations (Scopus)
3 Downloads (Pure)

Riemann-Finsler multi-valued geodesic tractography for HARDI

Sepasian, N., Thije Boonkkamp, J. H. M. T., Florack, L. M. J., Haar Romeny, B. M. T. & Vilanova, A., 2014, Visualization and Processing of Tensors and Higher Order Descriptors for Multi-Valued Data. Westin, C. F., Vilanova, A. & Burgeth, B. (eds.). Berlin: Springer, p. 209-225 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Robustness of the gray code arrangements of the genetic code in mitochondria

Bosnacki, D., Eikelder, ten, H. M. M., Maanders, M. & Hilbers, P. A. J., 2014, ICT Innovations 2014 : World of Data. Madevska Bogdanova, A. & Gjorgjevikj, D. (eds.). Cham: Springer, p. 299-308 (Advances in Intelligent Systems and Computing; vol. 311).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Sharpening fibers in diffusion weighted MRI via erosion

Dela Haije, T. C. J., Duits, R. & Tax, C. M. W., 2014, Visualization and Processing of Tensors and Higher Order Descriptors for Multi-Valued Data, part II. Westin, C-F., Vilanova, A. & Burgeth, B. (eds.). Springer, p. 97-126 (Mathematics and Visualization).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

5 Citations (Scopus)

The molecular kinetics of the Fischer-Tropsch reaction

Santen, van, R. A., Ghouri, M. M., Markvoort, A. J. & Hensen, E. J. M., 2014, Bridging Heterogeneous and Homogeneous Catalysis : Concepts, Strategies and Applications. Li, C. & Liu, Y. (eds.). New York: Wiley, p. 553-606 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

1 Citation (Scopus)
1 Downloads (Pure)
2013

Fractional flow reserve

Sels, J. E. M., Tonino, W. A. L. & Pijls, N. H. J., 1 Jan 2013, Catheter-Based Cardiovascular Interventions: A Knowledge-Based Approach. Berlin: Springer, p. 349-361 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

1 Citation (Scopus)

Improving the arterial pulsatility by applying feedback control to pump flow rate in a continuous flow left ventricular assist device supported cardiovascular system

Bozkurt, S., Tuijl, van, S., Vosse, van de, F. N. & Rutten, M. C. M., 2013, Medical Devices and Design in Cardiovascular Applications. Ali, J. (ed.). MeDDiCA, p. 36-55

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

2 Downloads (Pure)

Innovations in 3D interventional X-ray imaging

Zinger, S., Ruijters, D., Snoeren, R. M., Papalazarou, C. & With, de, P. H. N., 2013, Handbook of Medical and Healthcare Technologies. Furht, B. & Agarwal, A. (eds.). New York: Springer, p. 79-119

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

3 Downloads (Pure)

The differential structure of images

Haar Romenij, ter, B. M., 2013, Mathematical optics. Lakshminarayanan, V. (ed.). Boca Raton: CRC Press, p. 581-597 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

1 Downloads (Pure)
2012

Classification study of DTI and HARDI 1 anisotropy measures for HARDI data 2 simplification

Prckovska, V., Descoteaux, M., Poupon, C., Haar Romenij, ter, B. M. & Vilanova, A., 2012, New developments in the visualization and processing of tensor fields. Laidlaw, D. & Vilanova, A. (eds.). Springer, p. 229-252 379 p. (Mathematics and visualization).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

3 Citations (Scopus)

Left invariant evolution equations on Gabor transforms

Duits, R., Führ, H. & Janssen, B. J., 2012, Mathematical Methods for Signal and Image Analysis and Representation. Florack, L. M. J., Duits, R., Jongbloed, G., Lieshout, van, M. N. M. & Davies, P. L. (eds.). London: Springer, p. 137-158 (Computational Imaging and Vision; vol. 41).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Methods for multiscale modeling of membranes

Goga, N., Rzepiela, A., Melo, M. N., de Vries, A. H., Hadar, A., Markvoort, A. J., Nedea, S. & Berendsen, H. J. C., 1 Jan 2012, Advances in planar lipid bilayers and liposomes. Iglic, A. (ed.). Amsterdam: Elsevier, p. 139-170 32 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

6 Citations (Scopus)

Multi-view autostereoscopic visualization using bandwidth-limited channels

Zinger, S., Morvan, Y., Ruijters, D., Do, Q. L. & With, de, P. H. N., 2012, Depth map and 3D imaging applications : algorithms and technologies. Malik, A. S., Choi, T. S. & Nisar, H. (eds.). Hershey: IGI Global, p. 363-378 649 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Scale space representations locally adapted to the geometry of base and target manifold

Florack, L. M. J., 2012, Mathematical Methods for Signal and Image Analysis and Representation. Florack, L. M. J., Duits, R., Jongbloed, G., Lieshout, van, M. N. M. & Davies, P. L. (eds.). London: Springer, p. 159-171 (Computational Imaging and Vision; vol. 41).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

1 Downloads (Pure)

Visual exploration of simulated and measured blood flow

Vilanova, A., Preim, B., Pelt, van, R. F. P., Gasteiger, R., Neugebauer, M. & Wischgoll, T., 2012, Scientific Visualization 2011. Springer, p. 1-20

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

2 Citations (Scopus)
1 Downloads (Pure)
2011

Lipid acrobatics in the membrane fusion arena

Markvoort, A. J. & Marrink, S. J., 2011, Membrane Fusion. Kozlov, M. M. & Chernomordik, L. V. (eds.). New York: Elsevier, p. 259-294 (Current Topics on Membranes; vol. 68).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

52 Citations (Scopus)
2 Downloads (Pure)

Modeling and analysis of biological networks with model checking (Chapter 39)

Bosnacki, D., Hilbers, P. A. J., Mans, R. S. & Vink, de, E. P., 2011, Algorithms in computational molecular biology : techniques, approaches and applications. Elloumi, M. & Zomaya, A. Y. (eds.). Hoboken: Wiley, p. 915-940 (Wiley Series in Bioinformatics).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

2 Citations (Scopus)
7 Downloads (Pure)

Multi-scale and multi-orientation medical image analysis

Haar Romenij, ter, B. M., 2011, Biomedical image processing. Deserno, T. M. (ed.). Berlin: Springer, p. 177-196 595 p. (Biological and Medical Physics, Biomedical Engineering).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

2010

Biomechanical analysis of abdominal aortic aneurysms

Speelman, L., Bosboom, E. M. H., Schurink, G. W. H. & Vosse, van de, F. N., 2010, Patient-specific modeling of the cardiovascular system : technology driven personalized medicine. Kerckhoffs, R. C. P. (ed.). Berlin: Springer, p. 95-111

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

1 Citation (Scopus)
1 Downloads (Pure)

Fast classification scheme for HARDI data simplification

Prckovska, V., Vilanova, A., Poupon, C., Haar Romenij, ter, B. M. & Descoteaux, M., 2010, ICT Innovations 2009 part 2. Davcev, D. & Marx Gómez, J. (eds.). Berlin Heidelberg: Springer, p. 345-355

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

1 Downloads (Pure)
2009

Coarse Grained Molecular Dynamics

Markvoort, A. J., 2009, Computational Methods in Catalysis and Materials Science. Weinheim: Wiley-VCH Verlag, p. 151-166

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

3 Citations (Scopus)

In silico modelling and analysis of ribosome kinetics and aa-tRNA competition

Bosnacki, D., Pronk, T. E. & Vink, de, E. P., 2009, Transactions on Computational Systems Biology XI. Priami, C., Back, R. J. & Petre, I. (eds.). Berlin: Springer, p. 69-89 (Lecture notes in computer science; vol. 5750).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

2 Citations (Scopus)

Patient-specific computational modeling to improve the clinical outcome of vascular access creation

Huberts, W., Bosboom, E. M. H., Bode, A. S., Kroon, J., Merkx, M. A. G., Planken, R. N., Tordoir, J. H. M. & Vosse, van de, F. N., 2009, Vascular access. Tordoir, J. (ed.). Edizioni Minerva Medica S.p.A.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Systems biology applied to cancer research

Seigneuric, R., Riel, van, N. A. W., Starmans, M. H. W., Erk, van, A., Evelo, C. T. A., Wouters, B. G. & Lambin, P., 2009, Handbook of research on systems biology applications in medicine Volume I. Daskalaki, A. (ed.). Hershey, PA: Medical Information Science Reference, p. 339-353

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Viscoelastic instabilities in injection molding

Peters, G. W. M. & Bogaerds, A. C. B., 2009, Injection molding : technology and fundamentals. Kamal, M. R., Isayev, A. & Liu, S-J. (eds.). Munich: Hanser Publishers, p. 653-684 (Progress in polymer processing).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

5 Downloads (Pure)
2008

Analysis of distance/similarity measures for diffusion tensor imaging

Peeters, T. H. J. M., Rodrigues, P., Vilanova, A. & Haar Romeny, B. M. T., 2008, Visualization and Processing of Tensor Fields. Laidlaw, D. & Weickert, J. (eds.). Berlin: Springer, p. 113-136 24 p. (Mathematics and Visualization).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

27 Citations (Scopus)
2007

Breast tumor classification and visualization with machine-learning approaches

Nattkemper, T. W., Degenhard, A. & Twellmann, T., 2007, Cancer Imaging Vol. 1: Lung and Breast Carcinomas. Hayat, M. A. (ed.). Amsterdam: Academic Press Inc., p. 309-324

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Coronaire fysiologie en myocard ischemie

Pijls, N. H. J., 2007, Cardiologie. Wall, van der, E. & Werf, van de, F. (eds.). Houten: Bohn Stafleu van Loghum, p. 167-176

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Image Processing on Diagnostic Workstations

Haar Romenij, ter, B. M., 2007, Image Processing in Radiology. Neri, E., Caramella, D., Bartolozzi, C. & Baert, A. L. (eds.). Berlin: Springer, p. 123-134 (Medical Radiology).

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

On the knowledge of students and professors at Eindhoven UNiversity of Technology

Eikelder, ten, H. M. M., 2007, Liber Amicorum Jan de Graaf. Meer, van der, J. C. (ed.). p. 44-50

Research output: Chapter in Book/Report/Conference proceedingChapterAcademic

Techniques of virtual dissection of the colon based on spiral CT data

Sorantin, E., Balogh, E., Vilanova, A., Palagyi, K., Nyul, L. G., Lindbichler, F. & Ruppert, A., 1 Dec 2007, Image processing in radiology current applications. Neri, E., Caramella, D. & Bartolozzi, C. (eds.). Berlin: Springer, p. 257-268 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review