Biomedical Engineering

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• Transfer Learning for Anomaly Detection in Brain Magnetic Resonance Images

  Huijben, E. M. C. (Author), Pluim, J. P. W. (Supervisor 1), Cheplygina, V. (Supervisor 2), Eduati, F. (Supervisor 2), Kuijf, H. J. (External coach) & van Hespen, K. M. (External coach), 22 Feb 2021

  Student thesis: Master

• Transformation of intracranial direct electrical stimulation sites to postoperative MRI in awake glioma surgery

  Claessens, C. H. B. (Author), Breeuwer, M. (Supervisor 1), Scannell, C. (Supervisor 2), Markvoort, A. J. (Supervisor 2), Rutten, G.-J. (External coach) & Kolenbrander, I. (Supervisor 2), 25 Aug 2022

  Student thesis: Master

• Treating myocardial infarction with collagen I-Matrigel: MRI evaluation of therapy efficacy

  Marteijn, M. (Author), Strijkers, G. J. (Supervisor 1), Bouten, C. V. C. (Supervisor 2) & Nicolaij, K. (Supervisor 2), 31 Aug 2013

  Student thesis: Master

• Triggered protein release from terpolymer stabilized complex coacervate-based synthetic cells using strand displacement

  Cornelissens, F. R. A. (Author), van Stevendaal, M. H. M. E. (Supervisor 1), 13 Dec 2021

  Student thesis: Master

• Triple channel film dosimetry and its application to small animal radiation therapy

  van Hoof, S. J. (Author), Nicolaij, K. (Supervisor 1), Verhaegen, F. (External coach), Murrer, L. H. P. (External coach), Mutsaers, P. H. A. (Supervisor 2) & Rutten, M. C. M. (Supervisor 2), 30 Apr 2012

  Student thesis: Master

• Tumor delineation based on time activity curve differences assessed with dynamic FDG-PET

  Janssen, M. H. M. (Author), ter Haar Romenij, B. M. (Supervisor 1), Nicolaij, K. (Supervisor 2), de Ruysscher, R. (Supervisor 2) & Aerts, H. J. W. L. (Supervisor 2), 31 Aug 2007

  Student thesis: Master

• Tumor microenvironment on-a-chip to study angiogenic sprouting: A hydrogel-based platform embedding tumor spheroids

  Lauwers, R. T. J. (Author), Rutten, M. C. M. (Supervisor 1), Lüttge, R. (Supervisor 2), Jouy Bar, M. (Supervisor 2) & de Winde, C. M. (External coach), 29 Aug 2024

  Student thesis: Master

• Tunable self-assembly of monodisperse amphiphiles for drug delivery systems: using monodisperse oligo(L-lactic acid)-b-oligo(ethylene glycol)

  Ahn, M. M. L. (Author), Petkau - Milroy, K. (Supervisor 1) & Meijer, B. (Supervisor 2), 25 Jan 2018

  Student thesis: Master

• Tuning degradation of electrospun supramolecular UPy-polymers by chemical design for pelvic floor dysfunction treatment

  van der Lugt, S. A. (Author), Dankers, P. Y. W. (Supervisor 1) & Arts, B. (Supervisor 2), 14 Jun 2021

  Student thesis: Master

• Tuning supramolecular self-assembly in water by varying the aliphatic chain length

  Schoenmakers, S. M. C. (Author), Lafleur, R. P. M. (Supervisor 1) & Meijer, E. W. (Supervisor 2), 31 Aug 2017

  Student thesis: Master

• Tweaking Ameboid and Mesenchymal Migration Plasticity of DCs on Topographies

  van den Beemd, J. P. M. (Author), Gulce Iz, S. (Supervisor 1) & de Boer, J. (Supervisor 2), 31 Mar 2022

  Student thesis: Master

• Two-Component Supramolecular Systems based on Boron-Nitrogen Frustrated Lewis Pairs

  Jansen, S. A. H. (Author), Meijer, E. W. (Supervisor 1) & Chidchob, P. (Supervisor 2), 22 Feb 2021

  Student thesis: Master

• uCT imaging and monitoring of a silk fibroin scaffold for bone tissue engineering

  Preti, V. (Author), Hofmann Boss, S. (Supervisor 1), Ito, K. (Supervisor 2) & Melke, J. (Supervisor 2), 31 May 2016

  Student thesis: Master

• Ultra short echo time (UTE) MRI of mouse myocardial infarction

  Nelissen, J. L. (Author), van Nierop, B. J. (Supervisor 1), Strijkers, G. J. (Supervisor 2), Kouwenhoven, M. H. L. (Supervisor 2), Bax, N. A. M. (Supervisor 2) & Nicolaij, K. (Supervisor 2), 31 Aug 2012

  Student thesis: Master

• Ultrasound based analysis of perfusion problems in athletes

  Timmermans, F. (Author), Lopata, R. G. P. (Supervisor 1), Schep, G. (External coach) & Gilissen, M. (External coach), 28 Sept 2023

  Student thesis: Master

• Ultrasound based fluid-structure interactions of the Carotid Artery

  Leer, J. (Author), van de Vosse, F. N. (Supervisor 1), Lopata, R. G. P. (Supervisor 2) & de Ruijter, J. (Supervisor 2), 26 Mar 2020

  Student thesis: Master

• Ultrasound contrast agent diffusion modeling for prostate cancer detection

  Besseling, R. M. H. (Author), Hilbers, P. A. J. (Supervisor 1), Mischi, M. (Supervisor 2) & Zinger, S. (Supervisor 2), 31 Oct 2009

  Student thesis: Master

• Ultrasound synthesis using GANs with a region-specific loss function to improve left ventricle segmentation

  Mansilla Valle, L. (Author), Breeuwer, M. (Supervisor 1), Lopata, R. G. P. (Supervisor 2) & Pluim, J. P. W. (Supervisor 2), 27 Feb 2023

  Student thesis: Master

• Uncertainty estimation of deep machine learning models for histopathology image analysis

  van der Hoek, L. (Author), Pluim, J. P. W. (Supervisor 1), 15 Jun 2023

  Student thesis: Master

• Underlying mechanisms to in-stent restenosis: cellular responses to passive vs active stresses

  Schoutens, E. J. D. (Author), de Boer, J. (Supervisor 1), van der Sluis, O. (Supervisor 2) & Verbakel, J. (Supervisor 2), 12 Oct 2023

  Student thesis: Master

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• Understanding ligand competition in Notch signaling via agent-based modeling

  Kneefel, A. A. M. (Author), Passier, M. M. (Supervisor 1), Loerakker, S. (Supervisor 2) & Ristori, T. (Supervisor 2), 25 Jan 2024

  Student thesis: Master

• Understanding mechanisms of desaturation and bradycardia during central apnea in preterm infants using signal analysis and a modelling approach

  Lensen, I. S. (Author), Bovendeerd, P. H. M. (Supervisor 1), Andriessen, P. (External coach) & van Pul, C. (External coach), 24 Sept 2020

  Student thesis: Master

• Understanding the effect of breast implant surface topography on macrophage-fibroblast cross-talk

  Jägers, J. G. W. (Author), Sudarsanam, P. (Supervisor 1), 27 Feb 2023

  Student thesis: Master

• Understanding the interacton between CFTR and 14-3-3: towards a cure for cystic fibrosis

  Salentijn, G. E. (Author), Stevers, L. M. (Supervisor 1), 31 May 2016

  Student thesis: Master

• Understanding the protein binding properties for glucose monitoring by molecular modeling and experiments

  Dong, L. (Author), van Basum, G. (External coach), Liu, Y. (External coach), Pieterse, K. (Supervisor 1) & Hilbers, P. A. J. (Supervisor 2), 31 Aug 2009

  Student thesis: Master

• Unraveling PETase adsorption affinity on semi-crystalline PET substrates

  van Oekel, I. N. M. (Author), Voets, I. K. (Supervisor 1), Magana, J. R. (Supervisor 2), Tas, R. P. (Supervisor 2) & Abdelmohsen, L. K. E. A. (Supervisor 2), 27 Jan 2021

  Student thesis: Master

• Unraveling surface tunability of supramolecular biomaterials at different length scales

  Schmitz, M. G. J. (Author), Dankers, P. Y. W. (Supervisor 1), Goor, O. J. G. M. (Supervisor 2) & Meijer, E. W. (Supervisor 2), 26 Jan 2017

  Student thesis: Master

• Unraveling the Driving Forces of Block Molecule Assembly

  de Graaf, F. V. (Author), Lamers, B. A. G. (Supervisor 1), Meijer, E. W. (Supervisor 2), Palmans, A. R. A. (Supervisor 2) & van Hest, J. C. M. (Supervisor 2), 22 Feb 2021

  Student thesis: Master

• Unravelling Insulin Resistance: Integrating Adipose Tissue, Skeletal Muscle, and Liver Genome-Scale Metabolic Models into the Mixed Meal Model

  Corbeij, L. (Author), O'Donovan, S. (Supervisor 1) & van Riel, N. A. W. (Supervisor 2), 29 Aug 2024

  Student thesis: Master

• Unravelling the effect of crystallinity and dispersity on the self-assembly behaviour of block copolymers in water

  Vleugels, M. E. J. (Author), Petkau - Milroy, K. (Supervisor 1), Meijer, B. (Supervisor 2), Voets, I. (Supervisor 2) & Palmans, A. (Supervisor 2), 27 Feb 2019

  Student thesis: Master

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• Unravel the role of WWP2 in the development of osteoarthritis using a microfluidic device

  Tuerlings, M. (Author), den Toonder, J. (Supervisor 1), Meulenbelt, I. (External coach) & Ramos, Y. F. M. (External coach), 30 Aug 2018

  Student thesis: Master

• Uptake of paramagnetic RGD- and non-targeted liposomes by macrophages in vitro: a combined MRI and fluorescence microscopy study

  Goessens, E. (Author), Kok, M. B. (Supervisor 1), Strijkers, G. J. (Supervisor 2) & Nicolaij, K. (Supervisor 2), 30 Apr 2007

  Student thesis: Master

• UPy-functionalized proteins: supramolecular immobilization into biomaterials

  Rensen, M. A. J. (Author), Dankers, P. Y. W. (Supervisor 1), Merkx, M. (Supervisor 2), Meijer, E. W. (Supervisor 2), Sijbesma, R. P. (Supervisor 2) & Bouten, C. V. C. (Supervisor 2), 31 Dec 2005

  Student thesis: Master

• Uric acid crystallization in the presence of urate oxidase

  Mehmedbasic, M. (Author), Voets, I. K. (Supervisor 1), Atkins, D. (Supervisor 2), Meijer, E. W. (Supervisor 2) & Schenning, A. P. H. J. (Supervisor 2), 25 Apr 2018

  Student thesis: Master

• Use of T2-weighted images in computer aided diagnosis for breast MRI

  van Aalst, W. L. C. (Author), Buurman, J. (External coach), Twellmann, T. (Supervisor 1) & Gerritsen, F. A. (Supervisor 2), 31 Aug 2007

  Student thesis: Master

• Using ADAPT to find missing regulation in a kinetic model of glycolysis

  Dekkers, N. J. J. H. (Author), van Riel, N. A. W. (Supervisor 1) & Teusink, B. (External coach), 30 Jun 2016

  Student thesis: Master

• Using notch ligands to spatially control endothelial sprouting in vitro

  Tiemeijer, L. A. (Author), Bouten, C. V. C. (Supervisor 1), Sahlgren, C. M. (Supervisor 2), Fledderus, J. O. (External coach), de Greef, T. F. A. (Supervisor 2), Frimat, J. M. S. (Supervisor 2) & Stassen, O. M. S. (External coach), 25 Aug 2016

  Student thesis: Master

• Using shear stress on endothelial cells to modulate the recruitment of smooth muscle cells through PDGF signaling inside a microfluidic device

  Nieuweboer, F. E. (Author), Bouten, C. V. C. (Supervisor 1), Sahlgren, C. M. (Supervisor 2), Dankers, P. Y. W. (Supervisor 2) & Cheng, C. (External coach), 29 Feb 2016

  Student thesis: Master

• Using soluble guanylate cyclase as nitric oxide binding domain in a protein-based nitric oxide sensor

  Vinkenborg, J. L. (Author), Evers, T. H. (Supervisor 1), Merkx, M. (Supervisor 2), Meijer, E. W. (Supervisor 2), van Genderen, M. H. P. (Supervisor 2) & van Zandvoort, M. (Supervisor 2), 28 Feb 2006

  Student thesis: Master

• Using stomatocytes and nanogels as a double protection layer for enhanced delivery of doxorubicin

  Muilwijk, T. (Author), Pijpers, I. A. B. (Supervisor 1) & Hest, van, J. C. M. (Supervisor 2), 28 May 2020

  Student thesis: Master

• Using Ultrasound Doppler to obtain patient-specific flow parameters for personalized Fluid-Structure Interaction modelling of Abdominal Aortic Aneurysms

  van Engelen, E. C. J. (Author), Lopata, R. G. P. (Supervisor 1), van de Vosse, F. N. (Supervisor 2), van Sambeek, M. R. H. M. (Supervisor 2), Rutten, M. C. M. (Supervisor 2) & Fonken, J. H. C. (Supervisor 2), 30 Mar 2023

  Student thesis: Master

• Utilizing non-natural peptides to explore the mechanism behind phosphopeptide binders to 14-3-3

  Craenmehr, F. W. B. (Author), Somsen, B. (Supervisor 1), Cossar, P. (Supervisor 2) & Brunsveld, L. (Supervisor 2), 27 Jan 2022

  Student thesis: Master

• Validation and error identification for pre-treatment EPID dosimetry for stereotactic body radiotherapy

  van Doormaal, R. J. A. (Author), Pluim, J. P. W. (Supervisor 1), Raaijmakers, A. J. E. (Supervisor 2) & Markvoort, A. J. (Supervisor 2), 2021

  Student thesis: Master

• Validation of 3D+t Ultrasound-Based Aortic Shear Modulus Estimation Methods

  Geven, B. W. M. (Author), Lopata, R. G. P. (Supervisor 1), Breeuwer, M. (Supervisor 2), van Sambeek, M. R. H. M. (Supervisor 2), Rutten, M. C. M. (Supervisor 2) & Maas, E. J. (Supervisor 2), 28 Sept 2023

  Student thesis: Master

• Validation of geometrical input parameters for a 1D model to analyze the pressure gradient over iliac artery stenoses

  Luiken, L. M. (Author), Huberts, W. (Supervisor 1) & Mees, B. M. E. (External coach), 22 Feb 2021

  Student thesis: Master

• Validation of the use of a minimal model of glucose metabolism during an oral test from both a physiological and an identification point of view

  Zijlstra, E. D. (Author), van Riel, N. A. W. (Supervisor 1), van den Bosch, P. P. J. (Supervisor 2), Nicolaij, K. (Supervisor 2) & van der Vusse, G. (Supervisor 2), 31 Dec 2004

  Student thesis: Master

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• Vascularization of tissue engineered muscle

  van Spreeuwel, A. C. C. (Author), Baaijens, F. P. T. (Supervisor 1), Brunsveld, L. (Supervisor 2), Bouten, C. V. C. (Supervisor 2), van Assen, H. C. (Supervisor 2) & van der Schaft, D. W. J. (Supervisor 2), 31 Aug 2010

  Student thesis: Master

• Velocity selective arterial spin labeling: perfusion MRI

  van de Ven, K. C. C. (Author), van der Toorn, A. (External coach), Dijkhuizen, R. M. (External coach), Strijkers, G. J. (Supervisor 1), Oomens, C. W. J. (Supervisor 2) & Nicolaij, K. (Supervisor 2), 31 Aug 2007

  Student thesis: Master

• Verification of ultrasound based characterization of biomechanical properties of abdominal aortic aneurysms using magnetic resonance imaging

  Schlepers, T. D. (Author), Lopata, R. G. P. (Supervisor 1), Nguyen, V. L. (Supervisor 2) & van de Vosse, F. N. (Supervisor 2), 31 Jan 2015

  Student thesis: Master

• Vertebral body stenting with a bioresorbable calcium phosphate cement: a prospective numerical analysis

  Roth, A. K. (Author), Ito, K. (Supervisor 1), van Rietbergen, B. (Supervisor 2), Peerlings, R. H. J. (Supervisor 2) & Willems, P. C. P. H. (External coach), 31 Aug 2011

  Student thesis: Master